Zobrazeno 1 - 10
of 56
pro vyhledávání: '"Angie S. Hinrichs"'
Autor:
Stephanie Goya, Christopher Ruis, Richard A. Neher, Adam Meijer, Ammar Aziz, Angie S. Hinrichs, Anne von Gottberg, Cornelius Roemer, Daniel G. Amoako, Dolores Acuña, Jakob McBroome, James R. Otieno, Jinal N. Bhiman, Josie Everatt, Juan C. Muñoz-Escalante, Kaat Ramaekers, Kate Duggan, Lance D. Presser, Laura Urbanska, Marietjie Venter, Nicole Wolter, Teresa C.T. Peret, Vahid Salimi, Varsha Potdar, Vítor Borges, Mariana Viegas
Publikováno v:
Emerging Infectious Diseases, Vol 30, Iss 8, Pp 1631-1641 (2024)
A globally implemented unified phylogenetic classification for human respiratory syncytial virus (HRSV) below the subgroup level remains elusive. We formulated global consensus of HRSV classification on the basis of the challenges and limitations of
Externí odkaz:
https://doaj.org/article/b056cff11c4e482c9b30b35d6274e9de
Autor:
Hiram Clawson, Brian T. Lee, Brian J. Raney, Galt P. Barber, Jonathan Casper, Mark Diekhans, Clay Fischer, Jairo Navarro Gonzalez, Angie S. Hinrichs, Christopher M. Lee, Luis R. Nassar, Gerardo Perez, Brittney Wick, Daniel Schmelter, Matthew L. Speir, Joel Armstrong, Ann S. Zweig, Robert M. Kuhn, Bogdan M. Kirilenko, Michael Hiller, David Haussler, W. James Kent, Maximilian Haeussler
Publikováno v:
Genome Biology, Vol 24, Iss 1, Pp 1-8 (2023)
Abstract Interactive graphical genome browsers are essential tools in genomics, but they do not contain all the recent genome assemblies. We create Genome Archive (GenArk) collection of UCSC Genome Browsers from NCBI assemblies. Built on our establis
Externí odkaz:
https://doaj.org/article/8226e568dade4fd09eb95b95cb4952fa
Autor:
Adriano de Bernardi Schneider, Michelle Su, Angie S. Hinrichs, Jade Wang, Helly Amin, John Bell, Debra A. Wadford, Àine O’Toole, Emily Scher, Marc D. Perry, Yatish Turakhia, Nicola De Maio, Scott Hughes, Russ Corbett-Detig
With the rapid spread and evolution of SARS-CoV-2, the ability to monitor its transmission and distinguish among viral lineages is critical for pandemic response efforts. The most commonly used software for the lineage assignment of newly isolated SA
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::139bd3170188b2b06f9dae520a04d10e
https://doi.org/10.1101/2023.05.26.542489
https://doi.org/10.1101/2023.05.26.542489
Autor:
Alexander M Kramer, Bryan Thornlow, Cheng Ye, Nicola De Maio, Jakob McBroome, Angie S Hinrichs, Robert Lanfear, Yatish Turakhia, Russell Corbett-Detig
Publikováno v:
Systematic Biology.
Phylogenetics has been foundational to SARS-CoV-2 research and public health policy, assisting in genomic surveillance, contact tracing, and assessing emergence and spread of new variants. However, phylogenetic analyses of SARS-CoV-2 have often relie
Autor:
Jakob McBroome, Adriano de Bernardi Schneider, Cornelius Roemer, Michael T. Wolfinger, Angie S. Hinrichs, Aine Niamh O’Toole, Christopher Ruis, Yatish Turakhia, Andrew Rambaut, Russell Corbett-Detig
Pathogen nomenclature systems are a key component of effective communication and collaboration for researchers and public health workers. Since February 2021, the Pango nomenclature for SARS-CoV-2 has been sustained by crowdsourced lineage proposals
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::8477adab4d0f13e0543d0bc597266660
https://doi.org/10.1101/2023.02.03.527052
https://doi.org/10.1101/2023.02.03.527052
Autor:
Luis R Nassar, Galt P Barber, Anna Benet-Pagès, Jonathan Casper, Hiram Clawson, Mark Diekhans, Clay Fischer, Jairo Navarro Gonzalez, Angie S Hinrichs, Brian T Lee, Christopher M Lee, Pranav Muthuraman, Beagan Nguy, Tiana Pereira, Parisa Nejad, Gerardo Perez, Brian J Raney, Daniel Schmelter, Matthew L Speir, Brittney D Wick, Ann S Zweig, David Haussler, Robert M Kuhn, Maximilian Haeussler, W James Kent
Publikováno v:
Nucleic Acids Res. 51, D1188–D1195 (2023)
Nucleic acids research, vol 51, iss D1
Nucleic acids research, vol 51, iss D1
The UCSC Genome Browser (https://genome.ucsc.edu) is an omics data consolidator, graphical viewer, and general bioinformatics resource that continues to serve the community as it enters its 23rd year. This year has seen an emphasis in clinical data,
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::017814974d408c9c131fcfc5b62b4eff
https://push-zb.helmholtz-muenchen.de/frontdoor.php?source_opus=66861
https://push-zb.helmholtz-muenchen.de/frontdoor.php?source_opus=66861
Autor:
Maximilian Haeussler, Jairo Navarro Gonzalez, Pranav Muthuraman, Clay Fischer, Angie S. Hinrichs, Jonathan Casper, Beagan Nguy, Hiram Clawson, Kate R. Rosenbloom, Luis R Nassar, Ann S. Zweig, Tiana Pereira, Christopher Lee, Robert M. Kuhn, W. James Kent, Matthew L. Speir, Brittney D Wick, Galt P. Barber, Brian T. Lee, Daniel Schmelter, David Haussler, Anna Benet-Pagès, Gerardo Perez, Brian J. Raney, Mark Diekhans
Publikováno v:
Nucleic acids research, vol 50, iss D1
Nucleic Acids Research
Nucleic Acids Research
The UCSC Genome Browser, https://genome.ucsc.edu, is a graphical viewer for exploring genome annotations. The website provides integrated tools for visualizing, comparing, analyzing, and sharing both publicly available and user-generated genomic data
Autor:
Christopher Ruis, Thomas P. Peacock, Luis Mariano Polo, Diego Masone, Maria Soledad Alvarez, Angie S. Hinrichs, Yatish Turakhia, Ye Cheng, Jakob McBroome, Russell Corbett-Detig, Julian Parkhill, R. Andres Floto
Exposure to different mutagens leaves distinct mutational patterns that can allow prediction of pathogen replication niches (Ruis 2022). We therefore hypothesised that analysis of SARS-CoV-2 mutational spectra might show lineage-specific differences,
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::88858069875c9e18f25e3af6e3d7a0c6
https://doi.org/10.1101/2022.09.27.509649
https://doi.org/10.1101/2022.09.27.509649
Autor:
Bryan, Thornlow, Alexander, Kramer, Cheng, Ye, Nicola, De Maio, Jakob, McBroome, Angie S, Hinrichs, Robert, Lanfear, Yatish, Turakhia, Russell, Corbett-Detig
Publikováno v:
bioRxiv : the preprint server for biology.
Phylogenetics has been foundational to SARS-CoV-2 research and public health policy, assisting in genomic surveillance, contact tracing, and assessing emergence and spread of new variants. However, phylogenetic analyses of SARS-CoV-2 have often relie
Autor:
Bryan Thornlow, Alexander Kramer, Cheng Ye, Nicola De Maio, Jakob McBroome, Angie S. Hinrichs, Robert Lanfear, Yatish Turakhia, Russell Corbett-Detig
Phylogenetics has been foundational to SARS-CoV-2 research and public health policy, assisting in genomic surveillance, contact tracing, and assessing emergence and spread of new variants. However, phylogenetic analyses of SARS-CoV-2 have often relie
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::404ba513a237b5ef23f12df6b85dd5ce
https://doi.org/10.1101/2021.12.02.471004
https://doi.org/10.1101/2021.12.02.471004