Ecosystem-specific microbiota and microbiome databases in the era of big data

Autor: Victor Lobanov, Angélique Gobet, Alyssa Joyce

Publikováno v: Environmental Microbiome, Vol 17, Iss 1, Pp 1-17 (2022)

Abstract The rapid development of sequencing methods over the past decades has accelerated both the potential scope and depth of microbiota and microbiome studies. Recent developments in the field have been marked by an expansion away from purely cat

Externí odkaz: https://doaj.org/article/d64a84ccd249460ba74dae378fd70485

A High Rate Algal Pond Hosting a Dynamic Community of RNA Viruses

Autor: Emily E. Chase, Sonia Monteil-Bouchard, Angélique Gobet, Felana H. Andrianjakarivony, Christelle Desnues, Guillaume Blanc

Publikováno v: Viruses, Vol 13, Iss 11, p 2163 (2021)

Despite a surge of RNA virome sequencing in recent years, there are still many RNA viruses to uncover—as indicated by the relevance of viral dark matter to RNA virome studies (i.e., putative viruses that do not match to taxonomically identified vir

Externí odkaz: https://doaj.org/article/1c6cca15912f421f900fa08c48180368

The Complete Genome Sequence of the Fish Pathogen Tenacibaculum maritimum Provides Insights into Virulence Mechanisms

Autor: David Pérez-Pascual, Aurelie Lunazzi, Ghislaine Magdelenat, Zoe Rouy, Alain Roulet, Celine Lopez-Roques, Robert Larocque, Tristan Barbeyron, Angélique Gobet, Gurvan Michel, Jean-François Bernardet, Eric Duchaud

Publikováno v: Frontiers in Microbiology, Vol 8 (2017)

Tenacibaculum maritimum is a devastating bacterial pathogen of wild and farmed marine fish with a broad host range and a worldwide distribution. We report here the complete genome sequence of the T. maritimum type strain NCIMB 2154T. The genome consi

Externí odkaz: https://doaj.org/article/dd5479c30b684772a5ce61bcc2c91287

Accumulation of detached kelp biomass in a subtidal temperate coastal ecosystem induces succession of epiphytic and sediment bacterial communities

Autor: Dominique Davoult, Maéva Brunet, Catherine Leblanc, Nolwen Le Duff, Gwenn Tanguy, Angélique Gobet, Florian de Bettignies, François Thomas

Publikováno v: Environmental Microbiology
Environmental Microbiology (1462-2912) (Wiley), 2021-03, Vol. 23, N. 3, P. 1638-1655
Environmental Microbiology, 2021, ⟨10.1111/1462-2920.15389⟩
Environmental Microbiology, Society for Applied Microbiology and Wiley-Blackwell, 2021, ⟨10.1111/1462-2920.15389⟩

International audience; Kelps are dominant primary producers in temperate coastal ecosystems. Large amounts of kelp biomass can be exported to the seafloor during the algal growth cycle or following storms, creating new ecological niches for the asso

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::5d5988add9d586450b0f86e332ba7ff5
https://doi.org/10.1111/1462-2920.15389

Erratum for Jouault et al., 'Alterocin, an Antibiofilm Protein Secreted by

Autor: Albane, Jouault, Angélique, Gobet, Marjolaine, Simon, Emilie, Portier, Morgan, Perennou, Erwan, Corre, Fanny, Gaillard, David, Vallenet, Gurvan, Michel, Yannick, Fleury, Alexis, Bazire, Alain, Dufour

Publikováno v: Appl Environ Microbiol

We sought to identify and study the antibiofilm protein secreted by the marine bacterium Pseudoalteromonas sp. strain 3J6. The latter is active against marine and terrestrial bacteria, including Pseudomonas aeruginosa clinical strains forming differe

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=pmid________::f0b3f9036d996e3579f49faaef33f105
https://pubmed.ncbi.nlm.nih.gov/32769182