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Akademický článek

A Novel SARS-CoV-2 Viral Sequence Bioinformatic Pipeline Has Found Genetic Evidence That the Viral 3′ Untranslated Region (UTR) Is Evolving and Generating Increased Viral Diversity

Autor: Carlos Farkas, Andy Mella, Maxime Turgeon, Jody J. Haigh

Publikováno v: Frontiers in Microbiology, Vol 12 (2021)

An unprecedented amount of SARS-CoV-2 sequencing has been performed, however, novel bioinformatic tools to cope with and process these large datasets is needed. Here, we have devised a bioinformatic pipeline that inputs SARS-CoV-2 genome sequencing i

Externí odkaz: https://doaj.org/article/bb07a6df8bb949c19a1bd18ec8459638

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annotate_my_genomes: an easy-to-use pipeline to improve genome annotation and uncover neglected genes by hybrid RNA sequencing

Autor: Carlos Farkas, Antonia Recabal, Andy Mella, Daniel Candia-Herrera, Maryori González Olivero, Jody Jonathan Haigh, Estefanía Tarifeño-Saldivia, Teresa Caprile

Publikováno v: GigaScience. 11

Background The advancement of hybrid sequencing technologies is increasingly expanding genome assemblies that are often annotated using hybrid sequencing transcriptomics, leading to improved genome characterization and the identification of novel gen

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::de214decd18eecca915186a64e01f9d6
https://doi.org/10.1093/gigascience/giac099

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Computational quest of adsorbents based on doped graphene nanosheets for phosgene uptake, and analysis of the co-adsorption phenomena

Autor: Diego Cortés-Arriagada, Andy Mella

Publikováno v: Synthetic Metals. 252:142-150

A density functional theory study was performed to analyse the interaction of COCl2 onto A-doped graphene nanosheets (AG, where A: Al, Si, Ti, Cr, Mn, Fe). Adsorption configurations, adsorption energies, electronic properties, and the interaction in

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::722c1a36ea429edbdfb48b14a8a8cd44
https://doi.org/10.1016/j.synthmet.2019.04.020

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Large-scale population analysis of SARS-CoV-2 whole genome sequences reveals host-mediated viral evolution with emergence of mutations in the viral Spike protein associated with elevated mortality rates

Autor: Andy Mella, Jody J. Haigh, Carlos Farkas

BackgroundWe aimed to further characterize and analyze in depth intra-host variation and founder variants of SARS-CoV-2 worldwide up until August 2020, by examining in excess of 94,000 SARS-CoV-2 viral sequences in order to understand SARS-CoV-2 vari

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::c2470c046530b0d032ebdcf9972f176d
https://doi.org/10.1101/2020.10.23.20218511

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Influence of the anion nature and alkyl substituents in the behavior of ionic liquids derived from phenylpyridines

Autor: Andy Mella, Ivan Gonzalez, Paulina Dreyse, Antonia Alarcón, Antonio Galdámez, Diego Cortés-Arriagada, Francisco Castillo

Publikováno v: Journal of Molecular Structure. 1154:382-391

Quaternary alkyl 2-phenylpyridinium and 2-(2,4-difluorophenyl)pyridinium amines with iodide, hexafluorophosphate and bis(trifluoromethylsulfonyl)imide anions have been fully characterized by 1H NMR, FT-IR and MALDI mass spectroscopic methods and stud

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::7124201a2cbaceb7e2533e1a18a09c13
https://doi.org/10.1016/j.molstruc.2017.10.062

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Adsorption of 2-thiophene curcuminoid molecules on a Au(111) surface

Autor: Domingo Jullian, Andy Mella, Alvaro S. Nunez, Eduardo Cisternas, Monica Soler, Marcos Flores

Publikováno v: Applied Surface Science. 427:620-625

We provide a systematic ab initio study on the adsorption of 2-thiophene curcuminoid (2-thphCCM) molecules on a Au(111) surface. In this work we present the determination of the optimal configuration of a single molecule on the surface as well as a d

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::d95bdc77a4a2f69246224989d26b807c
https://doi.org/10.1016/j.apsusc.2017.08.211

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Theoretical assessment of the photosensitization mechanisms of porphyrin–ruthenium(II) complexes for the formation of reactive oxygen species

Autor: Gloria I. Cárdenas-Jirón, E. Laura Coitiño, Andy Mella

Publikováno v: Journal of Photochemistry and Photobiology A: Chemistry. 294:68-74

Following a thermodynamics point of view, we analyzed a set of photosensitization mechanisms (energy transfer, electron transfer) given by seven reactions applied to porphyrin–ruthenium(II) complexes ( 1 – 6 ) and their fragments (ruthenium compl

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::a00f778352e75eab94f77291154221b4
https://doi.org/10.1016/j.jphotochem.2014.08.003

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Performance of doped graphene nanoadsorbents with first-row transition metals (Sc Zn) for the adsorption of water-soluble trivalent arsenicals: A DFT study

Autor: Andy Mella, Diego Cortés-Arriagada

Publikováno v: Journal of Molecular Liquids. 294:111665

The immobilization and removal of trivalent arsenic [As(III)] onto A-doped graphene (AG: AC93H24) nanoadsorbents with first-row transition metals (A: Sc Zn) was characterized by means of theoretical computations in the gas phase and in an explicit/im

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::19e55cca70a03a4f77dcb97c64ccee38
https://doi.org/10.1016/j.molliq.2019.111665

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