Zobrazeno 1 - 10
of 125
pro vyhledávání: '"Andriy, Kryshtafovych"'
Publikováno v:
Data in Brief, Vol 20, Iss , Pp 1629-1638 (2018)
142 protein structure models were submitted to second Cryo-EM model challenge (2015–2016). Accuracy of the models was evaluated with 54 evaluation scores. Results of the descriptive statistical analysis of the scores are provided in this article.
Externí odkaz:
https://doaj.org/article/d7cb3440cfe147729ee6950dab696538
Autor:
Andriy Kryshtafovych, Daniel J. Rigden
Publikováno v:
Proteins: Structure, Function, and Bioinformatics.
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::0aed5d5f477674b714dd62fdef6b9a43
https://doi.org/10.1002/prot.26533
https://doi.org/10.1002/prot.26533
Autor:
Daniel Rigden, Adam Simpkin, Shahram Mesdaghi, Filomeno Sánchez Rodríguez, Luc Elliott, David Murphy, Andriy Kryshtafovych, Ronan Keegan
The results of tertiary structure assessment at CASP15 are reported. For the first time, recognising the outstanding performance of AlphaFold 2 (AF2) at CASP14, all single chain predictions were assessed together, irrespective of whether a template w
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::b29845596b4fbe80a10cc69c9a50396e
https://doi.org/10.22541/au.168495671.14377331/v1
https://doi.org/10.22541/au.168495671.14377331/v1
Autor:
Rachael C. Kretsch, Ebbe S. Andersen, Janusz M. Bujnicki, Wah Chiu, Rhiju Das, Bingnan Luo, Benoît Masquida, Ewan K.S. McRae, Griffin M. Schroeder, Zhaoming Su, Joseph E. Wedekind, Lily Xu, Kaiming Zhang, Ivan N. Zheludev, John Moult, Andriy Kryshtafovych
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::d3f28f02a4000f7aab9c7db3dfbc965a
https://doi.org/10.22541/au.168487314.47726735/v1
https://doi.org/10.22541/au.168487314.47726735/v1
Autor:
Andriy Kryshtafovych, Maciej Antczak, Marta Szachniuk, Rachael C. Kretsch, Ramya Rangan, Phillip Pham, Rhiju Das, Xavier Robin, Gabriel Studer, Janani Durairaj, Jerome Eberhardt, Aaron Sweeney, Maya Topf, Torsten Schwede, Krzysztof Fidelis, John Moult
Prediction categories in the Critical Assessment of Structure Prediction (CASP) experiments change with the need to address specific problems in structure modeling. In CASP15, four new prediction categories were introduced: RNA structure, ligand-prot
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::1e34d47cd362304b547f57c0c364fba6
https://doi.org/10.22541/au.168371643.39402261/v1
https://doi.org/10.22541/au.168371643.39402261/v1
Autor:
Alfonso Valencia, Edoardo Milanetti, Victoria Ruiz-Serra, Rosalba Lepore, Camila Pontes, Andriy Kryshtafovych
Publikováno v:
UPCommons. Portal del coneixement obert de la UPC
Universitat Politècnica de Catalunya (UPC)
Proteins
Universitat Politècnica de Catalunya (UPC)
Proteins
We present the results of the assessment of the intramolecular residue–residue contact and distance predictions from groups participating in the 14th round of the CASP experiment. The performance of contact prediction methods was evaluated with the
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::69e5d0a9ebedb3ca6bd3a0a089a1eb32
https://doi.org/10.1002/prot.26248
https://doi.org/10.1002/prot.26248
Autor:
Reinhard Albrecht, Inokentijs Josts, Daniel C. Nelson, Petr G. Leiman, Sara B. Linden, Steven D. Rees, Andriy Kryshtafovych, Kinlin L. Chao, Osnat Herzberg, Geoffrey Chang, John Moult, Andrei N. Lupas, Alec Fraser, Marcus D. Hartmann, Alpha Fold team, Julia Greenfield, Henning Tidow, Maria L. Sokolova, Xiaoran Shang
Publikováno v:
Proteins
Critical assessment of structure prediction (CASP) conducts community experiments to determine the state of the art in computing protein structure from amino acid sequence. The process relies on the experimental community providing information about
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::697f2aff4856d823bda631bd34762686
https://doi.org/10.1002/prot.26223
https://doi.org/10.1002/prot.26223
Publikováno v:
Proteins
An evolutionary-based definition and classification of target evaluation units (EUs) is presented for the 14th round of the critical assessment of structure prediction (CASP14). CASP14 targets included 84 experimental models submitted by various stru
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::334305af07a56510faf004fd3000b419
https://doi.org/10.1002/prot.26202
https://doi.org/10.1002/prot.26202
Autor:
Daniel J. Rigden, Shahram Mesdaghi, Andriy Kryshtafovych, Filomeno Sánchez Rodríguez, Adam J. Simpkin
Publikováno v:
Proteins
We report here an assessment of the model refinement category of the 14th round of Critical Assessment of Structure Prediction (CASP14). As before, predictors submitted up to five ranked refinements, along with associated residue-level error estimate
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::127d970501a645b2929580a30819831d
https://doi.org/10.1002/prot.26185
https://doi.org/10.1002/prot.26185
Publikováno v:
Proteins
This report describes the tertiary structure prediction assessment of difficult modeling targets in the 14(th) round of the Critical Assessment of Structure Prediction (CASP14). We implemented an official ranking scheme that used the same scores as t
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c8bc26a84a9c19f638872ec380e1b5dd
https://doi.org/10.1002/prot.26172
https://doi.org/10.1002/prot.26172