Zobrazeno 1 - 10
of 15
pro vyhledávání: '"Andrii Iudin"'
Autor:
Osman Salih, Matthew Hartley, Sriram Somasundharam, Simone Weyand, Paul K. Korir, Andrii Iudin, Gerard J. Kleywegt, Ugis Sarkans, Ardan Patwardhan
Publikováno v:
F1000Research, Vol 12 (2024)
Organised data is easy to use but the rapid developments in the field of bioimaging, with improvements in instrumentation, detectors, software and experimental techniques, have resulted in an explosion of the volumes of data being generated, making w
Externí odkaz:
https://doaj.org/article/8fb3ff8fceb9486ca7aeb5b1d8c8dae4
Autor:
Andrii Iudin, Sergey Voronov
Publikováno v:
East European Journal of Physics, Iss 3, Pp 10-20 (2019)
Collision of particles at high energies at accelerators is the main source of data used to obtain deeper understanding of the fundamental interactions and the structure of the matter. Processes of isolated photon production have provided many tests o
Externí odkaz:
https://doaj.org/article/f4a1d7c9856641f89c1cd343f5bde6a6
Autor:
Andrii Iudin, Ugis Sarkans, Mohamed A. Koronfel, Tom Fish, Ian Dobbie, Maria Harkiolaki, Ardan Patwardhan, Gerard J. Kleywegt
Publikováno v:
STAR Protocols, Vol 2, Iss 1, Pp 100253- (2021)
Summary: This protocol illustrates the steps necessary to deposit correlated 3D cryo-imaging data from cryo-structured illumination microscopy and cryo-soft X-ray tomography with the BioStudies and EMPIAR deposition databases of the European Bioinfor
Externí odkaz:
https://doaj.org/article/b6da21a9de314721897bd89a737b7f8a
Autor:
Ardan Patwardhan, Robert Brandt, Sarah J Butcher, Lucy Collinson, David Gault, Kay Grünewald, Corey Hecksel, Juha T Huiskonen, Andrii Iudin, Martin L Jones, Paul K Korir, Abraham J Koster, Ingvar Lagerstedt, Catherine L Lawson, David Mastronarde, Matthew McCormick, Helen Parkinson, Peter B Rosenthal, Stephan Saalfeld, Helen R Saibil, Sirarat Sarntivijai, Irene Solanes Valero, Sriram Subramaniam, Jason R Swedlow, Ilinca Tudose, Martyn Winn, Gerard J Kleywegt
Publikováno v:
eLife, Vol 6 (2017)
The integration of cellular and molecular structural data is key to understanding the function of macromolecular assemblies and complexes in their in vivo context. Here we report on the outcomes of a workshop that discussed how to integrate structura
Externí odkaz:
https://doaj.org/article/894e26f1fe364e90b4d2256c2a6eedf1
Autor:
Andrii Iudin, Paul K Korir, Sriram Somasundharam, Simone Weyand, Cesare Cattavitello, Neli Fonseca, Osman Salih, Gerard J Kleywegt, Ardan Patwardhan
Public archiving in structural biology is well established with the Protein Data Bank (PDB; wwPDB.org) catering for atomic models and the Electron Microscopy Data Bank (EMDB; emdb-empiar.org) for 3D reconstructions from cryo-EM experiments. Even befo
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a2c114ed5e5659769d02c930e652cb08
https://doi.org/10.1101/2022.10.04.510785
https://doi.org/10.1101/2022.10.04.510785
Autor:
Virginie Uhlmann, Jason R. Swedlow, David Grunwald, Ugis Sarkans, Peijun Zhang, Helen R. Saibil, Andrew W. Nicholls, Shuichi Onami, Cesare Catavitello, Ewan Birney, Jim Swoger, Jean-Karim Hériché, Perrine Paul-Gilloteaux, Frances Wong, Christopher Cawthorne, Maddy Parsons, Kedar Narayan, Josh Moore, Wah Chiu, Stephan Wagner-Conrad, Terry Meehan, Gerard J. Kleywegt, Michele C. Darrow, Gabriel G. Martins, Pasi Kankaanpää, Ardan Patwardhan, Caterina Strambio-De-Castillia, Omer Ali Bayraktar, Jan Ellenberg, Andrii Iudin, Elizabeth Duke, Nicholas James Sofroniew, Thomas Lemberger, Mary Barlow, Emmanuel Gustin, Paul Verkade, Maria Harkiolaki, Lenard M. Voortman, Jo McEntyre, Alvis Brazma, Nadine Utz, M. Romanchikova, Christian Tischer, Matthew R. G. Russell, Lucy M. Collinson, Helen Parkinson
Publikováno v:
Nat Methods
Nature Methods, 18, 1418-1422. NATURE RESEARCH
Nature Methods
Nature Methods, Nature Publishing Group, 2021, ⟨10.1038/s41592-021-01166-8⟩
Nature Methods, 2021, ⟨10.1038/s41592-021-01166-8⟩
et al. 2021, ' REMBI: Recommended Metadata for Biological Images : enabling reuse of microscopy data in biology ', Nature Methods, vol. 18, no. 12, pp. 1418-1422 . https://doi.org/10.1038/s41592-021-01166-8
Nature Methods, 18, 1418-1422. NATURE RESEARCH
Nature Methods
Nature Methods, Nature Publishing Group, 2021, ⟨10.1038/s41592-021-01166-8⟩
Nature Methods, 2021, ⟨10.1038/s41592-021-01166-8⟩
et al. 2021, ' REMBI: Recommended Metadata for Biological Images : enabling reuse of microscopy data in biology ', Nature Methods, vol. 18, no. 12, pp. 1418-1422 . https://doi.org/10.1038/s41592-021-01166-8
Bioimaging data have significant potential for reuse, but unlocking this potential requires systematic archiving of data and metadata in public databases. We propose draft metadata guidelines to begin addressing the needs of diverse communities withi
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c00e62ec205b43631b3b94003fdeb930
https://pubmed.ncbi.nlm.nih.gov/34021280
https://pubmed.ncbi.nlm.nih.gov/34021280
Autor:
Mohamed A. Koronfel, Ian M. Dobbie, Ardan Patwardhan, Gerard J. Kleywegt, Maria Harkiolaki, Andrii Iudin, Ugis Sarkans, Tom Fish
Publikováno v:
STAR Protocols
STAR Protocols, Vol 2, Iss 1, Pp 100253-(2021)
STAR Protocols, Vol 2, Iss 1, Pp 100253-(2021)
Summary This protocol illustrates the steps necessary to deposit correlated 3D cryo-imaging data from cryo-structured illumination microscopy and cryo-soft X-ray tomography with the BioStudies and EMPIAR deposition databases of the European Bioinform
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::41c1389a713e5fe8281568f74ba29b1a
https://pubmed.ncbi.nlm.nih.gov/33490973
https://pubmed.ncbi.nlm.nih.gov/33490973
Autor:
Helen R. Saibil, Helen Parkinson, Matt McCormick, Peter B. Rosenthal, Sriram Subramaniam, Catherine L. Lawson, Andrii Iudin, Stephan Saalfeld, Martin L. Jones, Lucy M. Collinson, Gerard J. Kleywegt, Sarah J. Butcher, Ardan Patwardhan, Ilinca Tudose, Martyn Winn, Abraham J. Koster, Paul K. Korir, David Gault, Robert Brandt, Ingvar Lagerstedt, Corey W. Hecksel, Jason R. Swedlow, David N. Mastronarde, Sirarat Sarntivijai, Juha T. Huiskonen, Kay Grünewald, Irene Solanes Valero
Publikováno v:
eLife, Vol 6 (2017)
eLife
eLife
The integration of cellular and molecular structural data is key to understanding the function of macromolecular assemblies and complexes in their in vivo context. Here we report on the outcomes of a workshop that discussed how to integrate structura
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::8cc54c7009b83401fe2021461a68c5d0
https://elifesciences.org/articles/25835
https://elifesciences.org/articles/25835
Autor:
Juha T. Huiskonen, Irene Solanes Valero, Martin L. Jones, Helen R. Saibil, Lucy M. Collinson, Matt McCormick, Helen Parkinson, Martyn Winn, Ardan Patwardhan, Abraham J. Koster, Andrii Iudin, Robert Brandt, Ilinca Tudose, Kay Grünewald, Stephan Saalfeld, Corey W. Hecksel, Catherine L. Lawson, Peter B. Rosenthal, Gerard J. Kleywegt, Paul K. Korir, Sarah J. Butcher, David N. Mastronarde, David Gault, Sirarat Sarntivijai, Ingvar Lagerstedt, Jason R. Swedlow, Sriram Subramaniam
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::e4ad5b8334488c42feb765499b788e2f
https://doi.org/10.7554/elife.25835.008
https://doi.org/10.7554/elife.25835.008