Evaluating the Potential Fitness Effects of Chinook Salmon (Oncorhynchus tshawytscha) Aquaculture Using Non-Invasive Population Genomic Analyses of MHC Nucleotide Substitution Spectra

Autor: Evan J. Wilson, Andrew M. Shedlock

Publikováno v: Animals, Vol 13, Iss 4, p 593 (2023)

Genetic diversity plays a vital role in the adaptability of salmon to changing environmental conditions that can introduce new selective pressures on populations. Variability among local subpopulations may increase the chance that certain advantageou

Externí odkaz: https://doaj.org/article/57bcd381924942ec992a52cb345deb51

Enhanced DNA Extraction and PCR Amplification of Mitochondrial Genes from Formalin-Fixed Museum Specimens

Autor: Andrew M. Shedlock, Margo G. Haygood, Theodore W. Pietsch, Paul Bentzen

Publikováno v: BioTechniques, Vol 22, Iss 3, Pp 394-400 (1997)

Externí odkaz: https://doaj.org/article/4fd320910e6c4ef4a22eac5dae5291a0

Tissue and Temperature-Specific RNA-Seq Analysis Reveals Genomic Versatility and Adaptive Potential in Wild Sea Turtle Hatchlings (Caretta caretta)

Autor: Micah Mills, Nia Kyritsis, Matthew H. Godfrey, Craig A. Harms, Andrew M. Shedlock, Paul E. Anderson, Julie C Chow

Publikováno v: Animals, Vol 11, Iss 3013, p 3013 (2021)
Animals
Volume 11
Issue 11

Background: Digital transcriptomics is rapidly emerging as a powerful new technology for modelling the environmental dynamics of the adaptive landscape in diverse lineages. This is particularly valuable in taxa such as turtles and tortoises (order Te

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::aae989a77b0748cfa283b6886a362c18
https://www.mdpi.com/2076-2615/11/11/3013

Domestication process of the goat revealed by an analysis of the nearly complete mitochondrial protein-encoding genes.

Autor: Koh Nomura, Takahiro Yonezawa, Shuhei Mano, Shigehisa Kawakami, Andrew M Shedlock, Masami Hasegawa, Takashi Amano

Publikováno v: PLoS ONE, Vol 8, Iss 8, p e67775 (2013)

Goats (Capra hircus) are one of the oldest domesticated species, and they are kept all over the world as an essential resource for meat, milk, and fiber. Although recent archeological and molecular biological studies suggested that they originated in

Externí odkaz: https://doaj.org/article/4382f450978c472a9e046612ef2cff83

Whole genome analysis of a schistosomiasis-transmitting freshwater snail

Autor: Gerald M. Mkoji, Ittiprasert Wannaporn, Xiao-Jun Wu, Julia B. Carleton, Gloria I. Giraldo-Calderón, Matty Knight, Catherine S. Jones, Anthony T. Papenfuss, Elio Hideo Baba, Brian J. Raney, Richard M. Cripps, Christine Coustau, Martin T. Swain, René Feyereisen, Judith E. Humphries, Nithya Raghavan, Kathryn M. Ryan, Céline Cosseau, Karl F. Hoffmann, Michael S. Blouin, Edwin J. Routledge, TyAnna L. Lovato, Min Zhao, Olga Baron, Fabiano Sviatopolk-Mirsky Pais, Mikkel Christensens, Sandra W. Clifton, Leonid L. Moroz, Maria G. Castillo, Damian L. Trujillo, Donald P. McManus, Emanuela V. Volpi, Liana K. Jannotti-Passos, Scott P Lawton, Joanna M. Bridger, Yesid Cuesta-Astroz, Eric S. Loker, David Duval, Fernanda Ludolf, Bronwyn Rotgans, Mónica Medina, Di Liang, Benjamin Gourbal, Izinara C Rosse, Catrina Fronick, Sarah K. Buddenborg, Roberta Lima Caldeira, Umar Niazi, Aurélie Kapusta, Christoph Grunau, Scott F. Cummins, Katherine M. Buckley, Milind Misra, Matheus de Souza Gomes, LaDeana W. Hillier, Iain W. Chalmers, Guillaume Mitta, Scott J. Emrich, Kathrin K. Geyer, Wander de Jesus Jeremias, Larissa L. S. Scholte, Laurence Rodrigues do Amaral, Juliana G Assis, Jacob A. Tennessen, Emmanuel A. Pila, Patrick C. Hanington, Andrew M. Shedlock, Wesley C. Warren, Chris Botka, Sandra Grossi Gava, Coen M. Adema, Janeth J. Pena, Satwant Kaur, Chad Tomlinson, Richard Galinier, Michelle A. Gordy, Bishoy Kamel, Guilherme Oliveira, Anne E. Lockyer, Jonathan P. Rast, Andrea B. Kohn, Daniel Lawson, Richard K. Wilson, Patrick Minx, Bryony C. Bonning, Peter C. FitzGerald, Christopher J. Bayne, Omar dos Santos Carvalho, Monica Munoz-Torres, Tianfang Wang, David Rollinson, Vince Magrini, Kyle K. Biggar, Titouan Quelais, Leslie R. Noble, Utibe Bickham-Wright, Francislon Silva de Oliveira, Cédric Feschotte, Daniel J. Jackson, Joris M. Koene, Michael J. Montague, Anthony J. Walker, Lucinda Fulton, Daniel S.T. Hughes, Susan Jobling, Rob Peace, Halime D. Arican-Goktas, Nathalie Dinguirard, Timothy P. Yoshino, Mohammed Yusuf, Cesar E. Montelongo, Michael E. Geusz, Sijun Liu, Si-Ming Zhang, Kenneth B. Storey, Leon di Stephano, Yanin Limpanont

Publikováno v: Nature Communications
Nature Communications, Nature Publishing Group, 2017, 8, pp.15451. ⟨10.1038/ncomms15451⟩
Nature Communications, Vol 8, Iss 1, Pp 1-12 (2017)
Nature Communications, 8:15451 (2017). Nature Publishing Group
Nature Communications (8), . (2017)
Nature Communications (2041-1723) (Nature Publishing Group), 2017-05, Vol. 8, N. 15451, P. 12p.
Adema, C M, Hillier, L W, Jones, C S, Loker, E S, Knight, M, Minx, P, Oliveira, G D, Raghavan, N, Shedlock, A, do Amaral, L R, Arican-Goktas, H D, Assis, J G, Baba, E H, Baron, O L, Bayne, C J, Bickham-Wright, U, Biggar, K K, Blouin, M, Bonning, B C, Botka, C, Bridger, J M, Buckley, K M, Buddenborg, S K, Lima Caldeira, R, Carleton, J, Carvalho, O S, Castillo, M G, Chalmers, I W, Christensens, M, Clifton, S W, Cosseau, C, Coustau, C, Cripps, R M, Cuesta-Astroz, Y, Cummins, S F, di Stephano, L, Dinguirard, N, Duval, D, Emrich, S, Feschotte, C, Feyereisen, R, FitzGerald, P, Fronick, C, Fulton, L, Galinier, R, Gava, S G, Geusz, M, Geyer, K K, Giraldo-Calderón, G I, de Souza Gomes, M, Gordy, M A, Gourbal, B, Grunau, C, Hanington, P C, Hoffmann, K F, Hughes, D S T, Humphries, J, Jackson, D J, Jannotti-Passos, L K, de Jesus Jeremias, W, Jobling, S, Kamel, B, Kapusta, A, Kaur, S, Koene, J M, Kohn, A B, Lawson, D, Lawton, S P, Liang, D, Limpanont, Y, Liu, S, Lockyer, A E, Lovato, T L, Ludolf, F, Magrini, V, McManus, D P, Medina, M, Misra, M, Mitta, G, Mkoji, G M, Montague, M J, Montelongo, C, Moroz, L L, Munoz-Torres, M C, Niazi, U, Noble, L R, Oliveira, F S, Pais, F S, Papenfuss, A T, Peace, R, Pena, J J, Pila, E A, Quelais, T, Raney, B J, Rast, J P, Rollinson, D, Rosse, I C, Rotgans, B, Routledge, E J, Ryan, K M, Scholte, L L S, Storey, K B, Swain, M, Tennessen, J A, Tomlinson, C, Trujillo, D L, Volpi, E V, Walker, A J, Wang, T, Wannaporn, I, Warren, W C, Wu, X-J, Yoshino, T P, Junaid Yusuf, M, Zhang, S-M, Zhao, M & Wilson, R K 2017, ' Whole genome analysis of a schistosomiasis-transmitting freshwater snail ', Nature Communications, vol. 8, 15451 . https://doi.org/10.1038/ncomms15451
Adema, C M, Hillier, L W, Jones, C S, Loker, E S, Knight, M, Minx, P, Oliveira, G, Raghavan, N, Shedlock, A, do Amaral, L R, Arican-Goktas, H D, Assis, J G, Baba, E H, Baron, O L, Bayne, C J, Bickham-Wright, U, Biggar, K K, Blouin, M, Bonning, B C, Botka, C, Bridger, J M, Buckley, K M, Buddenborg, S K, Lima Caldeira, R, Carleton, J, Carvalho, O S, Castillo, M G, Chalmers, I W, Christensens, M, Clifton, S, Cosseau, C, Coustau, C, Cripps, R M, Cuesta-Astroz, Y, Cummins, S F, di Stephano, L, Dinguirard, N, Duval, D, Emrich, S, Feschotte, C, Feyereisen, R, FitzGerald, P, Fronick, C, Fulton, L, Galinier, R, Gava, S G, Geusz, M, Geyer, K K, Giraldo-Calderón, G I, de Souza Gomes, M, Gordy, M A, Gourbal, B, Grunau, C, Hanington, P C, Hoffmann, K F, Hughes, D, Humphries, J, Jackson, D J, Jannotti-Passos, L K, de Jesus Jeremias, W, Jobling, S, Kamel, B, Kapusta, A, Kaur, S, Koene, J M, Kohn, A B, Lawson, D, Lawton, S P, Liang, D C, Limpanont, Y, Liu, S, Lockyer, A E, Lovato, T L, Ludolf, F, Magrini, V, McManus, D P, Medina, M, Misra, M, Mitta, G, Mkoji, G M, Montague, M J, Montelongo, C, Moroz, L L, Munoz-Torres, M C, Niazi, U, Noble, L R, Oliveira, F S, Pais, F S, Papenfuss, A T, Peace, R, Pena, J J, Pila, E A, Quelais, T, Raney, B J, Rast, J P, Rollinson, D, Rosse, I C, Rotgans, B, Routledge, E J, Ryan, K M, Scholte, L L S, Storey, K B, Swain, M, Tennessen, J A, Tomlinson, C, Trujillo, D L, Volpi, E V, Walker, A J, Wang, T, Wannaporn, I, Warren, W C, Wu, X-J, Yoshino, T P, Yusuf, M, Zhang, S-M, Zhao, M & Wilson, R K 2017, ' Whole genome analysis of a schistosomiasis-transmitting freshwater snail ', Nature Communications, vol. 8, 15451 (2017), pp. 15451 . https://doi.org/10.1038/ncomms15451

Biomphalaria snails are instrumental in transmission of the human blood fluke Schistosoma mansoni. With the World Health Organization's goal to eliminate schistosomiasis as a global health problem by 2025, there is now renewed emphasis on snail contr

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::124a26e7ccb40754de9af66790763b9d
https://hal.archives-ouvertes.fr/hal-01523953