Zobrazeno 1 - 10
of 63
pro vyhledávání: '"Andrew J. Severin"'
Autor:
Rick Masonbrink, Tom R. Maier, Usha Muppirala, Arun S. Seetharam, Etienne Lord, Parijat S. Juvale, Jeremy Schmutz, Nathan T. Johnson, Dmitry Korkin, Melissa G. Mitchum, Benjamin Mimee, Sebastian Eves-van den Akker, Matthew Hudson, Andrew J. Severin, Thomas J. Baum
Publikováno v:
BMC Genomics, Vol 25, Iss 1, Pp 1-1 (2024)
Externí odkaz:
https://doaj.org/article/7a853e5f1af543528b92fba7bc5cb2e4
Autor:
Wyatt A. Shell, Michael A. Steffen, Hannah K. Pare, Arun S. Seetharam, Andrew J. Severin, Amy L. Toth, Sandra M. Rehan
Publikováno v:
Communications Biology, Vol 4, Iss 1, Pp 1-9 (2021)
Shell et al. compare the molecular evolution of bee genomes across species with varying social behaviours. Their findings indicate that eusocial lineages tend to have more gene family expansion than weakly social lineages. Transcriptomic data suggest
Externí odkaz:
https://doaj.org/article/8615583b778e4acca5f9f2ca0f0df1a7
Publikováno v:
BMC Bioinformatics, Vol 20, Iss 1, Pp 1-13 (2019)
Abstract Background Creating a scalable computational infrastructure to analyze the wealth of information contained in data repositories is difficult due to significant barriers in organizing, extracting and analyzing relevant data. Shared data scien
Externí odkaz:
https://doaj.org/article/27d4592a4a08475a9dbdceb30f6a8c91
Autor:
Rick Masonbrink, Tom R. Maier, Usha Muppirala, Arun S. Seetharam, Etienne Lord, Parijat S. Juvale, Jeremy Schmutz, Nathan T. Johnson, Dmitry Korkin, Melissa G. Mitchum, Benjamin Mimee, Sebastian Eves-van den Akker, Matthew Hudson, Andrew J. Severin, Thomas J. Baum
Publikováno v:
BMC Genomics, Vol 20, Iss 1, Pp 1-14 (2019)
Abstract Background Heterodera glycines, commonly referred to as the soybean cyst nematode (SCN), is an obligatory and sedentary plant parasite that causes over a billion-dollar yield loss to soybean production annually. Although there are genetic de
Externí odkaz:
https://doaj.org/article/77bd9e4783af4f7faf9b53c2791b5bbe
Publikováno v:
Frontiers in Microbiology, Vol 10 (2020)
Cross-talk between the gut microbiota and neurochemicals affects health and well-being of animals. However, little is known about this interaction in chickens despite their importance in food production. Probiotics and live Salmonella vaccines are mi
Externí odkaz:
https://doaj.org/article/7444e3e5edcc48579be601ecd2ca02b4
Autor:
Catherine M. Purcell, Arun S. Seetharam, Owyn Snodgrass, Sofia Ortega-García, John R. Hyde, Andrew J. Severin
Publikováno v:
BMC Genomics, Vol 19, Iss 1, Pp 1-11 (2018)
Abstract Background The assembly and annotation of a genome is a valuable resource for a species, with applications ranging from conservation genomics to gene discovery. Genomic resource development is especially important for species in culture, suc
Externí odkaz:
https://doaj.org/article/36295512cabb460ab1bd08b0e9f49ce6
Publikováno v:
Genomics Data, Vol 6, Iss C, Pp 67-69 (2015)
In this study, the tail muscle microbiota of pacific white shrimp (Litopenaeus vannamei) sourced from five countries across Central and South America and Southeast Asia were determined and compared. The genomic DNA was sequenced at around 10× covera
Externí odkaz:
https://doaj.org/article/61b9769bc155473ba686ec80883c7646
Autor:
Timothy A. Johnson, Torey Looft, Andrew J. Severin, Darrell O. Bayles, Daniel J. Nasko, K. Eric Wommack, Adina Howe, Heather K. Allen
Publikováno v:
mBio, Vol 8, Iss 4 (2017)
ABSTRACT Carbadox is a quinoxaline-di-N-oxide antibiotic fed to over 40% of young pigs in the United States that has been shown to induce phage DNA transduction in vitro; however, the effects of carbadox on swine microbiome functions are poorly under
Externí odkaz:
https://doaj.org/article/3d8a07994516454c94ded003c5252937
Autor:
Jennifer Chang, Amanda R Stahlke, Sivanandan Chudalayandi, Benjamin D Rosen, Anna K Childers, Andrew J Severin
Publikováno v:
Genome Biology and Evolution. 15
Long-read sequencing has revolutionized genome assembly, yielding highly contiguous, chromosome-level contigs. However, assemblies from some third generation long read technologies, such as Pacific Biosciences (PacBio) Continuous Long Reads (CLR), ha
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f1ee5fcdf76ea49bc01d8b5e38877af4
https://doi.org/10.1093/gbe/evad020
https://doi.org/10.1093/gbe/evad020
Autor:
Lei Huang, Yuxin Zhao, Mingfeng Cao, Marissa Gustafson, Carmen Lopez, Andrew J. Severin, Zengyi Shao, Deon Ploessl, Maryam Sayadi, Saptarshi Ghosh, Siva Chudalayandi
Publikováno v:
Nature Chemical Biology. 18:38-46
Inefficient homology-directed repair (HDR) constrains CRISPR-Cas9 genome editing in organisms that preferentially employ nonhomologous end joining (NHEJ) to fix DNA double-strand breaks (DSBs). Current strategies used to alleviate NHEJ proficiency in
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::beff9fa15372e901293a9c91d4dc61bb
https://doi.org/10.1038/s41589-021-00893-5
https://doi.org/10.1038/s41589-021-00893-5