Candida auris Discovery through Community Wastewater Surveillance during Healthcare Outbreak, Nevada, USA, 2022

Autor: Alessandro Rossi, Jorge Chavez, Thomas Iverson, John Hergert, Kelly Oakeson, Nathan LaCross, Chidinma Njoku, Andrew Gorzalski, Daniel Gerrity

Publikováno v: Emerging Infectious Diseases, Vol 29, Iss 2, Pp 422-425 (2023)

Candida auris transmission is steadily increasing across the United States. We report culture-based detection of C. auris in wastewater and the epidemiologic link between isolated strains and southern Nevada, USA, hospitals within the sampled sewersh

Externí odkaz: https://doaj.org/article/6ce2e3dc2424413c84dac10ffcbf66b0

TheiaEuk: a species-agnostic bioinformatics workflow for fungal genomic characterization

Autor: Frank J. Ambrosio, Michelle R. Scribner, Sage M. Wright, James R. Otieno, Emma L. Doughty, Andrew Gorzalski, Danielle Denise Siao, Steve Killian, Chi Hua, Emily Schneider, Michael Tran, Vici Varghese, Kevin G. Libuit, Mark Pandori, Joel R. Sevinsky, David Hess

Publikováno v: Frontiers in Public Health, Vol 11 (2023)

IntroductionThe clinical incidence of antimicrobial-resistant fungal infections has dramatically increased in recent years. Certain fungal pathogens colonize various body cavities, leading to life-threatening bloodstream infections. However, the iden

Externí odkaz: https://doaj.org/article/58b6f6a7664c41a1ac2f3663aeb43c37

GAMBIT (Genomic Approximation Method for Bacterial Identification and Tracking): A methodology to rapidly leverage whole genome sequencing of bacterial isolates for clinical identification

Autor: Jared Lumpe, Lynette Gumbleton, Andrew Gorzalski, Kevin Libuit, Vici Varghese, Tyler Lloyd, Farid Tadros, Tyler Arsimendi, Eileen Wagner, Craig Stephens, Joel Sevinsky, David Hess, Mark Pandori

Publikováno v: PLoS ONE, Vol 18, Iss 2 (2023)

Whole genome sequencing (WGS) of clinical bacterial isolates has the potential to transform the fields of diagnostics and public health. To realize this potential, bioinformatic software that reports identification results needs to be developed that

Externí odkaz: https://doaj.org/article/a1ddb06295eb4ea2ab9767eb8cc989fc

Rapid Diagnostic Testing for Response to the Monkeypox Outbreak — Laboratory Response Network, United States, May 17–June 30, 2022

Autor: Tricia A, Aden, Patricia, Blevins, Shannon Whitman, York, Stacy, Rager, Devika, Balachandran, Christina L, Hutson, David, Lowe, Chris N, Mangal, Tyler, Wolford, Audrey, Matheny, Whitni, Davidson, Kimberly, Wilkins, Rachael, Cook, Rebecca M, Roulo, Michael K, White, LaShondra, Berman, Janna, Murray, John, Laurance, Drew, Francis, Nicole M, Green, Ricardo A, Berumen, Anthony, Gonzalez, Stacy, Evans, Meghan, Hudziec, Diane, Noel, Michael, Adjei, Gregory, Hovan, Phil, Lee, Lisa, Tate, Remedios B, Gose, Robert, Voermans, Jennifer, Crew, Phillip R, Adam, Danielle, Haydel, Salimatu, Lukula, Nick, Matluk, Sandip, Shah, Joshua, Featherston, Daphne, Ware, Denise, Pettit, Emily, McCutchen, Edward, Acheampong, Erin, Buttery, Andrew, Gorzalski, Michael, Perry, Randal, Fowler, Robert B, Lee, Robert, Nickla, Richard, Huard, Amanda, Moore, Katie, Jones, Renee, Johnson, Erin, Swaney, Juan, Jaramillo, Cynthia, Reinoso Webb, Brandon, Guin, Janine, Yost, Annette, Atkinson, Latoya, Griffin-Thomas, Jessica, Chenette, Jessica, Gant, Alana, Sterkel, Harjinder K, Ghuman, James, Lute, Sandra C, Smole, Vaneet, Arora, Courtney K, Demontigny, Meilan, Bielby, Evelyn, Geeter, Kimberly A M, Newman, Mark, Glazier, Whitney, Lutkemeier, Megan, Nelson, Raymond, Martinez, Jasmine, Chaitram, Margaret A, Honein, Julie M, Villanueva

Publikováno v: MMWR. Morbidity and Mortality Weekly Report. 71:904-907

As part of public health preparedness for infectious disease threats, CDC collaborates with other U.S. public health officials to ensure that the Laboratory Response Network (LRN) has diagnostic tools to detect Orthopoxviruses, the genus that include

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::57dfb1abf521876c794c0d56ae3c5b57
https://doi.org/10.15585/mmwr.mm7128e1

Diagnostic Applications for RNA-Seq Technology and Transcriptome Analyses in Human Diseases Caused by RNA Viruses

Autor: Andrew Gorzalski, Irina Vlasova-St. Louis, Mark Pandori

Publikováno v: Applications of RNA-Seq in Biology and Medicine ISBN: 9781839626869

Human diseases caused by single-stranded, positive-sense RNA viruses, are among the deadliest of the 21st Century. In particular, there are two notable standouts: human immunodeficiency virus (HIV) and severe acute respiratory syndrome coronavirus 2

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c85cc80229a1f62ea31026bb7c466818
https://doi.org/10.5772/intechopen.99156