Zobrazeno 1 - 6
of 6
pro vyhledávání: '"Andrew G. Duncan"'
Autor:
Brian D. O'Connor, Denis Yuen, Vincent Chung, Andrew G. Duncan, Xiang Kun Liu, Janice Patricia, Benedict Paten, Lincoln Stein, Vincent Ferretti
Publikováno v:
F1000Research, Vol 6 (2017)
As genomic datasets continue to grow, the feasibility of downloading data to a local organization and running analysis on a traditional compute environment is becoming increasingly problematic. Current large-scale projects, such as the ICGC PanCancer
Externí odkaz:
https://doaj.org/article/dde76a7db51b43209a4b37b03553209b
Here we frame the cis-regulatory code (that connects the regulatory functions of non-coding regions, such as promoters and UTRs, to their DNA sequences) as a representation building problem. Representation learning has emerged as a new approach to un
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::c7bc88661350fcbafe22070865d04d3b
https://doi.org/10.1101/2023.04.09.536185
https://doi.org/10.1101/2023.04.09.536185
Autor:
Lincoln Stein, Gregory Hogue, Brian O'Connor, Walt Shands, Elizabeth A. Sheets, Kim Cullion, Natalie Perez, Benedict Paten, Charles Overbeck, Denis Yuen, Chaz Reid, Richard Hansen, Andrew G. Duncan, Nneka Olunwa, David Steinberg, Louise Cabansay, Gary Luu, Ash O'Farrell
Publikováno v:
Nucleic Acids Research
Dockstore (https://dockstore.org/) is an open source platform for publishing, sharing, and finding bioinformatics tools and workflows. The platform has facilitated large-scale biomedical research collaborations by using cloud technologies to increase
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e957e20a42b541304ce6d260d249f67f
https://doi.org/10.1093/nar/gkab346
https://doi.org/10.1093/nar/gkab346
Autor:
Andrew G. Duncan, Shanelle Mullany, Gurdeep Singh, Richard Zhang, Alan M. Moses, Sakthi D Moorthy, Ruxiao Tian, Jennifer A. Mitchell, Tahmid F Mehdi
Publikováno v:
Genome Res
Transcriptional enhancers are critical for development and phenotype evolution and are often mutated in disease contexts; however, even in well-studied cell types, the sequence code conferring enhancer activity remains unknown. To examine the enhance
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::017cd995d10e18ef4b41e3f27016642d
https://pubmed.ncbi.nlm.nih.gov/33712417
https://pubmed.ncbi.nlm.nih.gov/33712417
Autor:
Denis Yuen, Vincent Ferretti, Brian O'Connor, Vincent Chung, Andrew G. Duncan, Xiang Kun Liu, Janice Patricia, Lincoln Stein, Benedict Paten
Publikováno v:
F1000Research
As genomic datasets continue to grow, the feasibility of downloading data to a local organization and running analysis on a traditional compute environment is becoming increasingly problematic. Current large-scale projects, such as the ICGC PanCancer
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::0dddddd12c55a99ce1497bf22de45875
https://pubmed.ncbi.nlm.nih.gov/28344774
https://pubmed.ncbi.nlm.nih.gov/28344774
Autor:
Christopher P. McKay, Anne J. Anderson, Paul R. Grossl, Andrew G Duncan, Ronald C. Sims, Heather D. Smith
Publikováno v:
Journal of Biological Engineering
We discuss fluorescence as a method to detect polycyclic aromatic hydrocarbons and other organic molecules, as well as minerals on the surface of Mars. We present an instrument design that is adapted from the ChemCam instrument which is currently on
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::505338e994b7607e637c1f10ec23bb38
https://doi.org/10.1186/1754-1611-8-16
https://doi.org/10.1186/1754-1611-8-16