Zobrazeno 1 - 10
of 75
pro vyhledávání: '"Andrew D. Foote"'
Autor:
Marie Louis, Petra Korlević, Milaja Nykänen, Frederick Archer, Simon Berrow, Andrew Brownlow, Eline D. Lorenzen, Joanne O’Brien, Klaas Post, Fernando Racimo, Emer Rogan, Patricia E. Rosel, Mikkel-Holger S. Sinding, Henry van der Es, Nathan Wales, Michael C. Fontaine, Oscar E. Gaggiotti, Andrew D. Foote
Publikováno v:
Nature Communications, Vol 14, Iss 1, Pp 1-13 (2023)
Abstract Parallel evolution provides strong evidence of adaptation by natural selection due to local environmental variation. Yet, the chronology, and mode of the process of parallel evolution remains debated. Here, we harness the temporal resolution
Externí odkaz:
https://doaj.org/article/a5c58233985a4c168a1734e05c522d42
Autor:
Marianne Dehasque, María C. Ávila‐Arcos, David Díez‐del‐Molino, Matteo Fumagalli, Katerina Guschanski, Eline D. Lorenzen, Anna‐Sapfo Malaspinas, Tomas Marques‐Bonet, Michael D. Martin, Gemma G. R. Murray, Alexander S. T. Papadopulos, Nina Overgaard Therkildsen, Daniel Wegmann, Love Dalén, Andrew D. Foote
Publikováno v:
Evolution Letters, Vol 4, Iss 2, Pp 94-108 (2020)
Abstract Evolutionary processes, including selection, can be indirectly inferred based on patterns of genomic variation among contemporary populations or species. However, this often requires unrealistic assumptions of ancestral demography and select
Externí odkaz:
https://doaj.org/article/7ffeee4d7f684994a3a290d7dd9d4595
Autor:
Andrew D. Foote, Nagarjun Vijay, María C. Ávila-Arcos, Robin W. Baird, John W. Durban, Matteo Fumagalli, Richard A. Gibbs, M. Bradley Hanson, Thorfinn S. Korneliussen, Michael D. Martin, Kelly M. Robertson, Vitor C. Sousa, Filipe G. Vieira, Tomáš Vinař, Paul Wade, Kim C. Worley, Laurent Excoffier, Phillip A. Morin, M. Thomas P. Gilbert, Jochen B.W. Wolf
Publikováno v:
Nature Communications, Vol 7, Iss 1, Pp 1-12 (2016)
Killer whales have evolved into specialized ecotypes based on hunting strategies and ecological niches. Here, Andrew Foote and colleagues sequenced the whole genome of individual killer whales representing 5 different ecotypes from North Pacific and
Externí odkaz:
https://doaj.org/article/36f7570dd8f147cf9f4f95199841fd26
Autor:
Andrew D Foote, Alana Alexander, Lisa T Ballance, Rochelle Constantine, Bárbara Galletti Vernazzani Muñoz, Christophe Guinet, Kelly M Robertson, Mikkel-Holger S Sinding, Mariano Sironi, Paul Tixier, John Totterdell, Jared R Towers, Rebecca Wellard, Robert L Pitman, Phillip A Morin
Publikováno v:
Journal Of Heredity (0022-1503) (Oxford University Press (OUP)), 2023-04, Vol. 114, N. 2, P. 94-109
Genome sequences can reveal the extent of inbreeding in small populations. Here, we present the first genomic characterization of type D killer whales, a distinctive eco/morphotype with a circumpolar, subantarctic distribution. Effective population s
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::85b6b97fcd171112337b70dc055a23af
https://doi.org/10.1093/jhered/esac070
https://doi.org/10.1093/jhered/esac070
Autor:
Michael F. Fay, Andrew J. Helmstetter, Luke T. Dunning, Rhian J. Smith, Jackie Lighten, Owen G. Osborne, Daniel P. Wood, Laurence Mason, Aaron A. Comeault, Andrew D. Foote, Joe Parker, Alexander S. T. Papadopulos, Edward A. Straw
Publikováno v:
Molecular Biology and Evolution (MBE)
Molecular Biology and Evolution
Molecular Biology and Evolution
The impact of human-mediated environmental change on the evolutionary trajectories of wild organisms is poorly understood. In particular, species’ capacities to adapt rapidly (in hundreds of generations or less), reproducibly and predictably to ext
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6028a3675e59757382c5d3cbf0bfdb96
https://doi.org/10.1093/molbev/msab141
https://doi.org/10.1093/molbev/msab141
Autor:
Jacquelyn Mountcastle, Mark Blaxter, Alana Alexander, Patricia E. Rosel, Michael R. McGowen, Morten Tange Olsen, Mariana F. Nery, Michael C. Fontaine, Susana Caballero, Phillip A. Morin, Erich D. Jarvis, Andrew D. Foote, Morgan L. McCarthy, Olivier Fedrigo, Brigid Maloney, Shigehiro Kuraku
Publikováno v:
Marine mammal Science
Morin, P A, Alexander, A, Blaxter, M, Caballero, S, Fedrigo, O, Fontaine, M C, Foote, A D, Kuraku, S, Maloney, B, McCarthy, M L, McGowen, M R, Mountcastle, J, Nery, M F, Olsen, M T, Rosel, P E & Jarvis, E D 2020, ' Building genomic infrastructure : Sequencing platinum-standard reference-quality genomes of all cetacean species ', Marine Mammal Science, vol. 36, no. 4, pp. 1356-1366 . https://doi.org/10.1111/mms.12721
Marine Mammal Science
Marine Mammal Science, 2020, ⟨10.1111/mms.12721⟩
Marine Mammal Science, 36(4), 1356-1366. Wiley-Blackwell
Marine Mammal Science, Wiley, 2020, ⟨10.1111/mms.12721⟩
Morin, P A, Alexander, A, Blaxter, M, Caballero, S, Fedrigo, O, Fontaine, M C, Foote, A D, Kuraku, S, Maloney, B, McCarthy, M L, McGowen, M R, Mountcastle, J, Nery, M F, Olsen, M T, Rosel, P E & Jarvis, E D 2020, ' Building genomic infrastructure : Sequencing platinum-standard reference-quality genomes of all cetacean species ', Marine Mammal Science, vol. 36, no. 4, pp. 1356-1366 . https://doi.org/10.1111/mms.12721
Marine Mammal Science
Marine Mammal Science, 2020, ⟨10.1111/mms.12721⟩
Marine Mammal Science, 36(4), 1356-1366. Wiley-Blackwell
Marine Mammal Science, Wiley, 2020, ⟨10.1111/mms.12721⟩
International audience
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::9278a85cfc294f030ab6d2e4c3d94c0e
https://doi.org/10.1111/mms.12721
https://doi.org/10.1111/mms.12721
Publikováno v:
Molecular ecologyREFERENCES. 30(23)
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::05569e1ab52b70eb6df49c3808921bc0
https://pubmed.ncbi.nlm.nih.gov/34845797
https://pubmed.ncbi.nlm.nih.gov/34845797
Autor:
Milaja Nykänen, Camilla Hjorth Scharff-Olsen, Phillip A. Morin, Michael D. Martin, Andrew D. Foote, Shyam Gopalakrishnan, M. Thomas P. Gilbert, Marie Louis, Laurent Excoffier
Genomes of high latitude killer whales harbour signatures of post-glacial founding and expansion. Here, we investigate whether reduced efficacy of selection increased mutation load in founder populations, or whether recessive deleterious mutations ex
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::b49a25fb49c8e80f5e40a668fe9e836b
https://doi.org/10.1101/2021.08.21.457186
https://doi.org/10.1101/2021.08.21.457186
Autor:
Kelly M. Robertson, Rebecca Hooper, Rochelle Constantine, Renaud de Stephanis, Sara Tavares, Alana Alexander, Guangyi Fan, John A. Totterdell, Ruth Esteban, Nicholas J. Davison, Tim Gerrodette, Lisa T. Ballance, John W. Durban, Songhai Li, Paul Tixier, Phillip A. Morin, Michael D. Martin, C. S. Baker, Sarah L. Fordyce Martin, Robin W. Baird, Jay Barlow, Luciano Dalla Rosa, Filipa I. P. Samarra, Andrew Brownlow, Tim Collins, Laurent Excoffier, Andrew D. Foote, M. Bradley Hanson, Jochen B. W. Wolf, M. Thomas P. Gilbert, Karin A. Forney, Christophe Guinet, Paul R. Wade, Yaolei Zhang
Publikováno v:
Molecular Ecology (0962-1083) (Wiley), 2021-12, Vol. 30, N. 23, P. 6162-6177
Foote, A D, Hooper, R, Alexander, A, Baird, R W, Baker, C S, Ballance, L, Barlow, J, Brownlow, A, Collins, T, Constantine, R, Dalla Rosa, L, Davison, N J, Durban, J W, Esteban, R, Excoffier, L, Fordyce Martin, S L, Forney, K A, Gerrodette, T, Gilbert, M T P, Guinet, C, Hanson, M B, Li, S, Martin, M D, Robertson, K M, Samarra, F I P, de Stephanis, R, Tavares, S B, Tixier, P, Totterdell, J A, Wade, P, Wolf, J B W, Fan, G, Zhang, Y & Morin, P A 2021, ' Runs of homozygosity in killer whale genomes provide a global record of demographic histories ', Molecular Ecology, vol. 30, no. 23, pp. 6162-6177 . https://doi.org/10.1111/mec.16137
Molecular Ecology
Foote, Andrew D.; Hooper, Rebecca; Alexander, Alana; Baird, Robin W.; Baker, Charles Scott; Ballance, Lisa; Barlow, Jay; Brownlow, Andrew; Collins, Tim; Constantine, Rochelle; Dalla Rosa, Luciano; Davison, Nicholas J.; Durban, John W.; Esteban, Ruth; Excoffier, Laurent; Fordyce Martin, Sarah L.; Forney, Karin A.; Gerrodette, Tim; Gilbert, M. Thomas P.; Guinet, Christophe; ... (2021). Runs of homozygosity in killer whale genomes provide a global record of demographic histories. Molecular Ecology, 30(23), pp. 6162-6177. Wiley-Blackwell 10.1111/mec.16137
Molecular Ecology, 2021, 30, pp.6162-6177. ⟨10.1111/mec.16137⟩
Molecular Ecology, Wiley, 2021, ⟨10.1111/mec.16137⟩
Foote, A D, Hooper, R, Alexander, A, Baird, R W, Baker, C S, Ballance, L, Barlow, J, Brownlow, A, Collins, T, Constantine, R, Dalla Rosa, L, Davison, N J, Durban, J W, Esteban, R, Excoffier, L, Martin, S L F, Forney, K A, Gerrodette, T, Gilbert, M T P, Guinet, C, Hanson, M B, Li, S, Martin, M D, Robertson, K M, Samarra, F I P, de Stephanis, R, Tavares, S B, Tixier, P, Totterdell, J A, Wade, P, Wolf, J B W, Fan, G, Zhang, Y & Morin, P A 2021, ' Runs of homozygosity in killer whale genomes provide a global record of demographic histories ', Molecular Ecology, vol. 30, no. 23, pp. 6162-6177 . https://doi.org/10.1111/mec.16137
Foote, A D, Hooper, R, Alexander, A, Baird, R W, Baker, C S, Ballance, L, Barlow, J, Brownlow, A, Collins, T, Constantine, R, Dalla Rosa, L, Davison, N J, Durban, J W, Esteban, R, Excoffier, L, Fordyce Martin, S L, Forney, K A, Gerrodette, T, Gilbert, M T P, Guinet, C, Hanson, M B, Li, S, Martin, M D, Robertson, K M, Samarra, F I P, de Stephanis, R, Tavares, S B, Tixier, P, Totterdell, J A, Wade, P, Wolf, J B W, Fan, G, Zhang, Y & Morin, P A 2021, ' Runs of homozygosity in killer whale genomes provide a global record of demographic histories ', Molecular Ecology, vol. 30, no. 23, pp. 6162-6177 . https://doi.org/10.1111/mec.16137
Molecular Ecology
Foote, Andrew D.; Hooper, Rebecca; Alexander, Alana; Baird, Robin W.; Baker, Charles Scott; Ballance, Lisa; Barlow, Jay; Brownlow, Andrew; Collins, Tim; Constantine, Rochelle; Dalla Rosa, Luciano; Davison, Nicholas J.; Durban, John W.; Esteban, Ruth; Excoffier, Laurent; Fordyce Martin, Sarah L.; Forney, Karin A.; Gerrodette, Tim; Gilbert, M. Thomas P.; Guinet, Christophe; ... (2021). Runs of homozygosity in killer whale genomes provide a global record of demographic histories. Molecular Ecology, 30(23), pp. 6162-6177. Wiley-Blackwell 10.1111/mec.16137
Molecular Ecology, 2021, 30, pp.6162-6177. ⟨10.1111/mec.16137⟩
Molecular Ecology, Wiley, 2021, ⟨10.1111/mec.16137⟩
Foote, A D, Hooper, R, Alexander, A, Baird, R W, Baker, C S, Ballance, L, Barlow, J, Brownlow, A, Collins, T, Constantine, R, Dalla Rosa, L, Davison, N J, Durban, J W, Esteban, R, Excoffier, L, Martin, S L F, Forney, K A, Gerrodette, T, Gilbert, M T P, Guinet, C, Hanson, M B, Li, S, Martin, M D, Robertson, K M, Samarra, F I P, de Stephanis, R, Tavares, S B, Tixier, P, Totterdell, J A, Wade, P, Wolf, J B W, Fan, G, Zhang, Y & Morin, P A 2021, ' Runs of homozygosity in killer whale genomes provide a global record of demographic histories ', Molecular Ecology, vol. 30, no. 23, pp. 6162-6177 . https://doi.org/10.1111/mec.16137
International audience; Runs of homozygosity (ROH) occur when offspring inherit haplotypes that are identical by descent from each parent. Length distributions of ROH are informative about population history; specifically, the probability of inbreedi
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::babc6dbefac028fcbf455e942059f6fb
https://pubmed.ncbi.nlm.nih.gov/34416064
https://pubmed.ncbi.nlm.nih.gov/34416064
Autor:
Benoit Simon-Bouhet, Michael C. Fontaine, Andrew D. Foote, Simon Berrow, Kelly M. Roberston, Ramon Fallon, Marco Galimberti, Frederick I. Archer, Marie Louis, Daniel Wegmann, Patricia E. Rosel, Milaja Nykänen, Oscar E. Gaggiotti, Joanne O'Brien, Andrew Brownlow
Publikováno v:
Louis, M, Galimberti, M, Archer, F, Berrow, S, Brownlow, A, Fallon, R, Nykänen, M, O'Brien, J, Roberston, K M, Rosel, P E, Simon-Bouhet, B, Wegmann, D, Fontaine, M C, Foote, A D & Gaggiotti, O E 2021, ' Selection on ancestral genetic variation fuels repeated ecotype formation in bottlenose dolphins ', Science Advances, vol. 7, no. 44, eabg1245 . https://doi.org/10.1126/sciadv.abg1245
Science Advances
Science Advances, American Association for the Advancement of Science (AAAS), 2021, 7, pp.eabg1245. ⟨10.1126/sciadv.abg1245⟩
Science Advances, 2021, 7, pp.eabg1245. ⟨10.1126/sciadv.abg1245⟩
Science Advances, 7(44):eabg1245. AMER ASSOC ADVANCEMENT SCIENCE
Science Advances
Science Advances, American Association for the Advancement of Science (AAAS), 2021, 7, pp.eabg1245. ⟨10.1126/sciadv.abg1245⟩
Science Advances, 2021, 7, pp.eabg1245. ⟨10.1126/sciadv.abg1245⟩
Science Advances, 7(44):eabg1245. AMER ASSOC ADVANCEMENT SCIENCE
Description
Old genetic variants were key to the ability of bottlenose dolphins to repeatedly adapt to coastal waters across the world.
Studying repeated adaptation can provide insights into the mechanisms allowing species to adapt to novel
Old genetic variants were key to the ability of bottlenose dolphins to repeatedly adapt to coastal waters across the world.
Studying repeated adaptation can provide insights into the mechanisms allowing species to adapt to novel
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::87f306876f8a08b21e56e63e6c9642a5
https://curis.ku.dk/portal/da/publications/selection-on-ancestral-genetic-variation-fuels-repeated-ecotype-formation-in-bottlenose-dolphins(b61c1c99-0656-47e0-8a9c-28d99ad086c0).html
https://curis.ku.dk/portal/da/publications/selection-on-ancestral-genetic-variation-fuels-repeated-ecotype-formation-in-bottlenose-dolphins(b61c1c99-0656-47e0-8a9c-28d99ad086c0).html