Zobrazeno 1 - 10
of 50
pro vyhledávání: '"Andreas Gahlmann"'
Autor:
Ji Zhang, Yibo Wang, Eric D. Donarski, Tanjin T. Toma, Madeline T. Miles, Scott T. Acton, Andreas Gahlmann
Publikováno v:
npj Biofilms and Microbiomes, Vol 8, Iss 1, Pp 1-13 (2022)
Abstract Accurate detection and segmentation of single cells in three-dimensional (3D) fluorescence time-lapse images is essential for observing individual cell behaviors in large bacterial communities called biofilms. Recent progress in machine-lear
Externí odkaz:
https://doaj.org/article/bebe01b8a0d442158f142d7e437a16c8
Publikováno v:
Microbiology Spectrum, Vol 10, Iss 6 (2022)
ABSTRACT The membrane-embedded injectisome, the structural component of the virulence-associated type III secretion system (T3SS), is used by Gram-negative bacterial pathogens to inject species-specific effector proteins into eukaryotic host cells. T
Externí odkaz:
https://doaj.org/article/14e86083783d49798f4bd12a0b38c141
Autor:
Mingxing Zhang, Ji Zhang, Yibo Wang, Jie Wang, Alecia M. Achimovich, Scott T. Acton, Andreas Gahlmann
Publikováno v:
Nature Communications, Vol 11, Iss 1, Pp 1-13 (2020)
Accurate cell detection in dense bacterial biofilms is challenging. Here, the authors report an image analysis pipeline that is able to accurately segment and classify single bacterial cells in 3D fluorescence images: Bacterial Cell Morphometry 3D (B
Externí odkaz:
https://doaj.org/article/7a9bc6ded39a44f8ba843f3cc5a84278
Publikováno v:
ICASSP 2023 - 2023 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP).
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::41fcd32b4c61143f7995fd8e8dfa66e9
https://doi.org/10.1109/icassp49357.2023.10096865
https://doi.org/10.1109/icassp49357.2023.10096865
Publikováno v:
The Journal of Physical Chemistry B. 125:12187-12196
Imaging platforms that enable long-term, high-resolution imaging of biofilms are required to study cellular level dynamics within bacterial biofilms. By combining high spatial and temporal resolution and low phototoxicity, lattice light sheet microsc
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::fe8646aed3ae4d8de4411d1264d83030
https://doi.org/10.1021/acs.jpcb.1c07759
https://doi.org/10.1021/acs.jpcb.1c07759
3D single molecule tracking microscopy has enabled measurements of protein diffusion in living cells, offering information about protein dynamics and cellular environments. For example, different diffusive states can be resolved and assigned to prote
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::95d2922325c524eebd24f6613ce5bf30
https://doi.org/10.1101/2022.07.10.499479
https://doi.org/10.1101/2022.07.10.499479
Publikováno v:
Bioinformatics
Motivation Data-driven deep learning techniques usually require a large quantity of labeled training data to achieve reliable solutions in bioimage analysis. However, noisy image conditions and high cell density in bacterial biofilm images make 3D ce
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::0bb5e5a0d69719531aa4f2b59b8dbf85
https://pubmed.ncbi.nlm.nih.gov/35924980
https://pubmed.ncbi.nlm.nih.gov/35924980
The membrane-embedded injectisome, the structural component of the virulence-associated type III secretion system (T3SS), is used by gram-negative bacterial pathogens to inject species-specific effector proteins into eukaryotic host cells. The cytoso
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::628d943b2e240624c627298b490b532f
https://doi.org/10.1101/2022.04.25.488798
https://doi.org/10.1101/2022.04.25.488798
Publikováno v:
2022 IEEE 19th International Symposium on Biomedical Imaging (ISBI).
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::312b774bf9a7ac3864fb78f99c4a3b6a
https://doi.org/10.1109/isbi52829.2022.9761655
https://doi.org/10.1109/isbi52829.2022.9761655
Autor:
Scott T. Acton, Jie Wang, Andreas Gahlmann, Mingxing Zhang, Ji Zhang, Alecia M. Achimovich, Yibo Wang
Publikováno v:
Microscopy and Microanalysis. 27:3038-3040
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::8731fad89c3ca53b936e13af1575c79a
https://doi.org/10.1017/s1431927621010540
https://doi.org/10.1017/s1431927621010540