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pro vyhledávání: '"Amy H. Fitzpatrick"'
Autor:
Amy H. Fitzpatrick, Agnieszka Rupnik, Helen O'Shea, Fiona Crispie, Sinéad Keaveney, Paul Cotter
Publikováno v:
Frontiers in Microbiology, Vol 12 (2021)
This review aims to assess and recommend approaches for targeted and agnostic High Throughput Sequencing of RNA viruses in a variety of sample matrices. HTS also referred to as deep sequencing, next generation sequencing and third generation sequenci
Externí odkaz:
https://doaj.org/article/799cd83767554ed2b4263b4c93c7d332
Autor:
Amy H. Fitzpatrick, Agnieszka Rupnik, Helen O’Shea, Fiona Crispie, Paul D. Cotter, Sinéad Keaveney
Publikováno v:
Applied and Environmental Microbiology. 89
While foodborne outbreaks account for approximately 14% of norovirus cases (L. Verhoef, J.
Autor:
Amy H. Fitzpatrick, Agnieszka Rupnik, Helen O’Shea, Fiona Crispie, Sinéad Keaveney, Paul D. Cotter
Publikováno v:
Applied and Environmental Microbiology. 89
In order to survey noroviruses in our environment, it is essential that both wet-lab and computational methods are fit for purpose. Using a simulated sequencing data set, denoising-based (DADA2, Deblur and USEARCH-UNOISE3) and clustering-based pipeli
Autor:
Amy H Fitzpatrick, Agnieszka Rupnik, Helen O’Shea, Fiona Crispie, Paul D. Cotter, Sinéad Keaveney
Norovirus is a highly diverse RNA virus often implicated in food-borne outbreaks, particularly shellfish. Shellfish are filter feeders, and when harvested in bays exposed to wastewater overflow or storm overflows, they can harbour various pathogens,
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::2780eb7d8a39e7f78b65b5d84d6b0f39
https://doi.org/10.1101/2022.12.23.521849
https://doi.org/10.1101/2022.12.23.521849