Zobrazeno 1 - 10
of 57
pro vyhledávání: '"Amy D. Willis"'
Publikováno v:
BMC Genomics, Vol 25, Iss 1, Pp 1-18 (2024)
Abstract Background As a nexus of routine antibiotic use and zoonotic pathogen presence, the livestock farming environment is a potential hotspot for the emergence of zoonotic diseases and antibiotic resistant bacteria. Livestock can further facilita
Externí odkaz:
https://doaj.org/article/19ae62032396430a8adc41d8c616dcac
Publikováno v:
Genome Biology, Vol 24, Iss 1, Pp 1-15 (2023)
Abstract Recovering metagenome-assembled genomes (MAGs) from shotgun sequencing data is an increasingly common task in microbiome studies, as MAGs provide deeper insight into the functional potential of both culturable and non-culturable microorganis
Externí odkaz:
https://doaj.org/article/6f73b8bc342d44ea829ff6fba2400e07
Publikováno v:
Genome Biology, Vol 22, Iss 1, Pp 1-10 (2021)
Abstract Researchers must be able to generate experimentally testable hypotheses from sequencing-based observational microbiome experiments to discover the mechanisms underlying the influence of gut microbes on human health. We describe geneshot, a n
Externí odkaz:
https://doaj.org/article/b32b0dda71424fefae1e0642ce533a53
Autor:
Alon Shaiber, Amy D. Willis, Tom O. Delmont, Simon Roux, Lin-Xing Chen, Abigail C. Schmid, Mahmoud Yousef, Andrea R. Watson, Karen Lolans, Özcan C. Esen, Sonny T. M. Lee, Nora Downey, Hilary G. Morrison, Floyd E. Dewhirst, Jessica L. Mark Welch, A. Murat Eren
Publikováno v:
Genome Biology, Vol 21, Iss 1, Pp 1-35 (2020)
Abstract Introduction Microbial residents of the human oral cavity have long been a major focus of microbiology due to their influence on host health and intriguing patterns of site specificity amidst the lack of dispersal limitation. However, the de
Externí odkaz:
https://doaj.org/article/a6fb499471734e1d8c8eb15a4b66f129
Autor:
Samuel S. Minot, Amy D. Willis
Publikováno v:
Microbiome, Vol 7, Iss 1, Pp 1-10 (2019)
Abstract Background Whole-genome “shotgun” (WGS) metagenomic sequencing is an increasingly widely used tool for analyzing the metagenomic content of microbiome samples. While WGS data contains gene-level information, it can be challenging to anal
Externí odkaz:
https://doaj.org/article/a982bae075c647e9bd4eda57588d395f
Autor:
Amy D. Willis
Publikováno v:
Frontiers in Microbiology, Vol 10 (2019)
Understanding the drivers of diversity is a fundamental question in ecology. Extensive literature discusses different methods for describing diversity and documenting its effects on ecosystem health and function. However, it is widely believed that d
Externí odkaz:
https://doaj.org/article/a5468e1aa08a4596b8aa776d8f60596d
Autor:
Amy D. Willis
Publikováno v:
mSystems, Vol 4, Iss 3 (2019)
ABSTRACT High-throughput sequencing has facilitated discovery in microbiome science, but distinguishing true discoveries from spurious signals can be challenging. The Statistical Diversity Lab develops rigorous statistical methods and statistical sof
Externí odkaz:
https://doaj.org/article/8a685d4d7a404b6d888906e960bb251d
Differences in gut metagenomes between dairy workers and community controls: a cross-sectional study
BackgroundAs a nexus of routine antibiotic use and zoonotic pathogen presence, the live-stock farming environment is a potential hotspot for the emergence of zoonotic diseases and antibiotic resistant bacteria. Livestock can further facilitate diseas
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::bd6735020537d38fda5e8742f7af62c7
https://doi.org/10.1101/2023.05.10.540270
https://doi.org/10.1101/2023.05.10.540270
Autor:
Emily C Fogarty, Matthew S Schechter, Karen Lolans, Madeline L. Sheahan, Iva Veseli, Ryan Moore, Evan Kiefl, Thomas Moody, Phoebe A Rice, Michael K Yu, Mark Mimee, Eugene B Chang, Sandra L Mclellan, Amy D Willis, Laurie E Comstock, A Murat Eren
Publikováno v:
bioRxiv
Plasmids are extrachromosomal genetic elements that often encode fitness enhancing features. However, many bacteria carry ‘cryptic’ plasmids that do not confer clear beneficial functions. We identified one such cryptic plasmid, pBI143, which is u
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::3bb78fb064c191c93881f6df32683e7d
https://doi.org/10.1101/2023.03.25.534219
https://doi.org/10.1101/2023.03.25.534219
Autor:
Taylor E. Reiter, Luiz Irber, Alicia A. Gingrich, Dylan Haynes, N. Tessa Pierce-Ward, Phillip T. Brooks, Yosuke Mizutani, Dominik Moritz, Felix Reidl, Amy D. Willis, Blair D. Sullivan, C. Titus Brown
Microbial strains have closely related genomes but may have different phenotypes in the same environment. Shotgun metagenomic sequencing can capture the genomes of all strains present in a community but strain-resolved analysis from shotgun sequencin
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::5491a77a2b3ce2cc2c99fefb8b71a2e7
https://doi.org/10.1101/2022.06.30.498290
https://doi.org/10.1101/2022.06.30.498290