Zobrazeno 1 - 10
of 17
pro vyhledávání: '"Amlan Talukder"'
Publikováno v:
Scientific Reports, Vol 12, Iss 1, Pp 1-10 (2022)
Abstract Accurate identification of microRNA (miRNA) targets at base-pair resolution has been an open problem for over a decade. The recent discovery of miRNA isoforms (isomiRs) adds more complexity to this problem. Despite the existence of many meth
Externí odkaz:
https://doaj.org/article/62b3ac90686841f49e51f926a80f0d42
Publikováno v:
BMC Genomics, Vol 22, Iss 1, Pp 1-13 (2021)
Abstract Background It is still challenging to predict interacting enhancer-promoter pairs (IEPs), partially because of our limited understanding of their characteristics. To understand IEPs better, here we studied the IEPs in nine cell lines and nin
Externí odkaz:
https://doaj.org/article/9e464bce1890422eae124c90f6e6df00
Publikováno v:
Scientific Reports, Vol 11, Iss 1, Pp 1-13 (2021)
Abstract MicroRNAs (miRNAs) play important roles in post-transcriptional gene regulation and phenotype development. Understanding the regulation of miRNA genes is critical to understand gene regulation. One of the challenges to study miRNA gene regul
Externí odkaz:
https://doaj.org/article/ccdabcc9c3b34b83b49ec129f7e069ba
Autor:
Adeline Divoux, Katalin Sandor, Dora Bojcsuk, Amlan Talukder, Xiaoman Li, Balint L. Balint, Timothy F. Osborne, Steven R. Smith
Publikováno v:
Clinical Epigenetics, Vol 10, Iss 1, Pp 1-15 (2018)
Abstract Background Increased lower body fat is associated with reduced cardiometabolic risk. The molecular basis for depot-specific differences in gluteofemoral (GF) compared with abdominal (A) subcutaneous adipocyte function is poorly understood. I
Externí odkaz:
https://doaj.org/article/c0e5755a644146e6b3853adea4fa4ba7
Publikováno v:
Briefings in Bioinformatics
Motivation MicroRNAs (miRNAs) are small noncoding RNAs that play important roles in gene regulation and phenotype development. The identification of miRNA transcription start sites (TSSs) is critical to understand the functional roles of miRNA genes
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::040c811f0f87708723d544c5f8923589
https://doi.org/10.1093/bib/bbz178
https://doi.org/10.1093/bib/bbz178
Publikováno v:
Briefings in Bioinformatics. 22
The computational identification of long non-coding RNAs (lncRNAs) is important to study lncRNAs and their functions. Despite the existence of many computation tools for lncRNA identification, to our knowledge, there is no systematic evaluation of th
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::2e832f0633ed877bdcd18a4abf80faf2
https://doi.org/10.1093/bib/bbab285
https://doi.org/10.1093/bib/bbab285
Publikováno v:
BMC Genomics
BMC Genomics, Vol 22, Iss 1, Pp 1-13 (2021)
BMC Genomics, Vol 22, Iss 1, Pp 1-13 (2021)
Background It is still challenging to predict interacting enhancer-promoter pairs (IEPs), partially because of our limited understanding of their characteristics. To understand IEPs better, here we studied the IEPs in nine cell lines and nine primary
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a1d8b32acc04d288c33a0d8851b10caf
https://doi.org/10.1186/s12864-021-07440-5
https://doi.org/10.1186/s12864-021-07440-5
Additional file 1 Table S2. BCC statistics for promoters. Table S3. Clusters of enhancers. An enhancer shares at least one promoter target with all the other enhancers in its cluster. Table S4. The distance between each consecutive enhancer pairs in
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::985a6d084383b34e6c328f19ae60134b
Publikováno v:
Briefings in Bioinformatics
Machine learning methods have been widely applied to big data analysis in genomics and epigenomics research. Although accuracy and efficiency are common goals in many modeling tasks, model interpretability is especially important to these studies tow
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::b234eeea4490980f28a6fc5940e1079f
https://doi.org/10.1093/bib/bbaa177
https://doi.org/10.1093/bib/bbaa177
Autor:
Timothy F. Osborne, Adeline Divoux, Balint L. Balint, Dóra Bojcsuk, Amlan Talukder, Katalin Sandor, Xiaoman Li, Steven R. Smith
Publikováno v:
Clinical Epigenetics, Vol 10, Iss 1, Pp 1-15 (2018)
Clinical Epigenetics
Clinical Epigenetics
Background Increased lower body fat is associated with reduced cardiometabolic risk. The molecular basis for depot-specific differences in gluteofemoral (GF) compared with abdominal (A) subcutaneous adipocyte function is poorly understood. In the cur
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::829c8c873618425b625f53d7e49f51ff
http://link.springer.com/article/10.1186/s13148-018-0582-0
http://link.springer.com/article/10.1186/s13148-018-0582-0