Genome Editing of Rice by CRISPR-Cas: End-to-End Pipeline for Crop Improvement

Autor: Amit, Das, Pallavi, Ghana, Bhojaraja, Rudrappa, Rita, Gandhi, Venkata Sresty, Tavva, Amitabh, Mohanty

Publikováno v: Methods in molecular biology (Clifton, N.J.). 2238

CRISPR-Cas resonates a revolutionary genome editing technology applicable through a horizon spreading across microbial organism to higher plant and animal. This technology can be harnessed with ease to understand the basic genetics of a living system

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=pmid________::efa602a31b39e3726fc1c3241f59ec8c
https://pubmed.ncbi.nlm.nih.gov/33471328

Advancing Cell Biology and Functional Genomics in Maize Using Fluorescent Protein-Tagged Lines

Autor: Amitabh Mohanty, Daniel R. Hill, Agnes P. Chan, Xingyuan Ling, Anding Luo, Dorothy E. Tuthill, David A. Jackson, Stacy L. DeBlasio, Yan Yang, Tara Zadrozny, Katherine E. Williams, Anne W. Sylvester

Publikováno v: Plant Physiology. 149:601-605

Genomic resources have significantly impacted plant biology research in recent years. Cell biology has been further enabled by an ongoing revolution in visualization technologies. Using fluorescent proteins (FPs), we now have unprecedented views of c

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::40702683ddd701b4fcb5ec2948e0edd1
https://doi.org/10.1104/pp.108.130146

The map-based sequence of the rice genome

Autor: Shu Mei Liu, Hong-Hwa Chen, Kiran Kumar, Aki Iwabuchi, Luke J. Tallon, Yasuyuki Fujii, Yuichi Ito, Jennifer Currie, Douglas Fadrosh, Bruce Weaver, Hisakazu Iwama, Nahoko Fujitsuka, Arvind K. Bharti, Vivek Dalal, Eric Pelletier, Wataru Karasawa, Carol Soderlund, Masako Okamoto, Ajit K. Pal, Lei Zhang, Tomoko Maehara, Anupama Gaur, Tomotaro Nishikawa, Michiko Ikeda, Jingjie Zhu, Meizhong Luo, Yoshiharu Sato, Dibyendu Kumar, Mikiko Honda, Takuya Habara, Jianyu Song, Yuka Takazaki, Alok Singh, Ari Kikuta, Neilay Dedhia, Thomas E. Bureau, Eric Linton Victor Llaca, Nadia Demange, Yoshiaki Nagamura, Koh Ichi Kadowaki, Takanori Shimokawa, Kohei Arita, Patrick Wincker, Saori Hijishita, Kai Ying, Takahito Bito, Tae-Jin Yang, Mayu Yamamoto, Masahiro Yano, Paulo Dejalma Zimmer, Nagendra K. Singh, Atsuko Idonuma, Jia Liu, Anne Ciecko, Friedrich Engler, Shinji Naito, Pei Fang Lee, Hideki Nagasaki, Jianping Guan, Yoko Ichikawa, Sujit Dike, Shu Ouyang, Yuko Nakama, Masao Hamada, Saurabh Raghuvanshi, Ching San Chen, Teh Yuan Chow, Joseph Hsiao, Béatrice Segurens, Hiroaki Sakai, W. Richard McCombie, Nobukazu Namiki, Hiroyuki Kanamori, Mei-Chu Chung, Yiqi Lu, Claude Scarpelli, Kelly Moffat, Yoshino Chiden, Baltazar A. Antonio, Susan R. McCouch, Paramjit Khurana, Amy Bronzino Nelson, Tamara Feldblyum, Hiroshi Mizuno, Masatoshi Masukawa, Yoshihito Niimura, Tomoya Ohta, Joachim Messing, Yukiyo Ito, Lance E. Palmer, Antonio Costa de Oliveira, Nozomi Ono, Ai Ling Hour, Kumiko Tsuji, Qijun Weng, Michael W. Bevan, Guofan Hong, C. Robin Buell, Subodh K. Srivastava, Atul Bhargava, Galina Fuks, Masahiro Sugiura, Akio Miyao, Kristine Jones, John Yu Liou, Ayano Meguro, Aymeric R. De Vazeille, Mika Tsugane, Xiaohui Liu, Rie Fukunaka, Jean Weissenbach, Shu Jen Lin, Jayati Bera, Tomoya Baba, Yao-Cheng Lin, Lori Spiegel, Laurence Cattolico, Irfan Ahmad Ghazi, Shoko Saji, Jianzhong Wu, Danlin Fan, Takashi Gojobori, Rod A. Wing, Harumi Yamagata, Koji Arikawa, Shuliang Yu, Marcel Salanoubat, Yumi Nakamichi, Kristi Collura, Jetty S.S. Ammiraju, Vipin Gupta, Stephen I. Wright, Y. Huang, Qiang Zhao, Yuichi Katayose, Tingting Lu, Stacey E. Iobst, Akhilesh K. Tyagi, A. O'Shaughnessy, Tilak Raj Sharma, Hiroyoshi Aoki, Kazue Ito, Marina Nakashima, Vydianathan Ravi, J. F. Shaw, Takashi Matsumoto, Tamara Tsitrin, Yoshiyuki Mukai, Steve Reidmuller, Steve Young, Kozue Kamiya, Lidia Nascimento, Qi Feng, Shivani Johri, Kazuko Yukawa, Sylvie Samain, Hirohiko Hirochika, Kimiko Yamamoto, Matthew Reardon, Holly Cordum, Mu Kuei Chu, Kim Yul Ho, Victoria Zismann, Jessica Hill, Tomoko Ito, Gregory Wilson, Isamu Ohta, Bahattin Tanyolac, Amitabh Mohanty, Rie Yoshihara, Nikoleta Juretic, Bin Han, Jie Mu, Susan Van Aken, Satomi Hosokawa, Kayo Machita, Shaohua Jin, Odir Antônio Dellagostin, Satoshi Katagiri, Apichart Vanavichit, Takuji Sasaki, Douglas R. Hoen, Richard K. Wilson, Patrick Minx, Larry Overton, Rentao Song, Kimihiro Terasawa, Jang Ho Hahn, Steve Kavchok, Hiroko Yamane, Parul Khurana, Melissa De La Bastide, Gisela Orjeda, Francis Quetier, Katsumi Sakata, Anita Kapur, Hyeran Kim, Grace Pai, Ian Bancroft, Trilochan Mohapatra, Manami Negishi, Ya Ting Chao, Kanako Kurita, Mari Nakamura, Masaki Fujisawa, Maiko Ikeno, Yu Zhang, Miyuki Sakaguchi, Yuko Nagata, Harumi Kobayashi, Kamlesh Batra, Huisun Zhong, Mary Kim, T. Utterback, Shoji Yoshiki, A. Pandit, Chizuko Harada, Benjamin Burr, Jacqueline Jackson, Jitendra P. Khurana, Michie Shibata, Jiming Jiang, Hue Vuong, Chia Hsiung Cheng, Sachie Ito, Zhukuan Cheng, Qiaoping Yuan, Akiko Hayashi, Tatsumi Mizubayashi, Yeisoo Yu, Nathalie Choisne, Shubha Vij, Noriko Kobayashi, Vivekanand Balija, Hong Pang Wu, K. Sureshbabu, Ying Li, Theresa Zutavern, G. Sangsakoo, Kristen Gansberger, Yujun Zhang, Kazunori Waki, Weiwei Jin, R. Preston, Shigenori Ueda, Yilei Liu, Angélique D'Hont, Kwang-Jen Hsiao, Kumiko Sakai, Richard Bruskiewich, Luiz Anderson Teixeira de Mattos, Teri Rambo, Yue-Ie C. Hsing, Mahavir Yadav, Shinichi Yamamoto, Arnaud Couloux, Sally A. Leong, Kishor Gaikwad, Masumi Iijima, Takeshi Itoh, Gaspar Malone, Gladys Keizer, Anupam Dixit

Publikováno v: Nature

Rice, one of the world's most important food plants, has important syntenic relationships with the other cereal species and is a model plant for the grasses. Here we present a map-based, finished quality sequence that covers 95% of the 389 Mb genome,

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e3787cdeafa30a915daba53d912f1856
https://doi.org/10.1038/nature03895

Sequence analysis of the long arm of rice chromosome 11 for rice?wheat synteny

Autor: Saurabh Raghuvanshi, Takuji Sasaki, Arvind K. Bharti, Ajit K. Pal, Subodh K. Srivastava, Kamlesh Batra, Anita Kapur, Jitendra P. Khurana, Parul Khurana, Nagendra K. Singh, Paramjit Khurana, Akhilesh K. Tyagi, Rod A. Wing, Alok Singh, Joachim Messing, W. Richard McCombie, Ravi Vydianathan, Tilak Raj Sharma, Trilochan Mohapatra, Vikrant Gupta, Anupama Gaur, Amitabh Mohanty, Irfan Ahmad Ghazi, Vivek Dalal, Sulabha Sharma, Shubha Vij, Dibyendu Kumar, Anupam Dixit, Mahavir Yadav, Kishor Gaikwad, Ashutosh Bhargav

Publikováno v: Functional & Integrative Genomics. 4:102-117

The DNA sequence of 106 BAC/PAC clones in the minimum tiling path (MTP) of the long arm of rice chromosome 11, between map positions 57.3 and 116.2 cM, has been assembled to phase 2 or PLN level. This region has been sequenced to 10x redundancy by th

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::cb333eaf9bdae37f694671d46a08f9b4
https://doi.org/10.1007/s10142-004-0109-y

Analysis of Inheritability and Expression Profile of Single and Multi-copy Transgene(s) in Rice Over Generations

Autor: Akhilesh K. Tyagi, Hitesh Kathuria, Amitabh Mohanty

Publikováno v: Journal of Plant Biochemistry and Biotechnology. 12:103-107

Transformation of Oryza sativa subsp indica variety Pusa Basmati 1 with Agrobacterium tumefaciens strain LBA4404(pTOK233) carrying genes coding for neomycin phosphotransferase (nptII), β-glucuronidase (gus) and hygromycin phosphotransferase (hph) un

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::83f9a6d042261ea05236dccd8b28cb4b
https://doi.org/10.1007/bf03263169