Zobrazeno 1 - 10
of 45
pro vyhledávání: '"Amartya Sanyal"'
Autor:
Ahmed Ibrahim Samir Khalil, Siti Rawaidah Binte Mohammad Muzaki, Anupam Chattopadhyay, Amartya Sanyal
Publikováno v:
BMC Bioinformatics, Vol 21, Iss 1, Pp 1-25 (2020)
Abstract Background Hi-C and its variant techniques have been developed to capture the spatial organization of chromatin. Normalization of Hi-C contact map is essential for accurate modeling and interpretation of high-throughput chromatin conformatio
Externí odkaz:
https://doaj.org/article/e7cac9bf72514db7b3b5c23f4c504403
Publikováno v:
BMC Bioinformatics, Vol 21, Iss 1, Pp 1-22 (2020)
Abstract Background Detection of DNA copy number alterations (CNAs) is critical to understand genetic diversity, genome evolution and pathological conditions such as cancer. Cancer genomes are plagued with widespread multi-level structural aberration
Externí odkaz:
https://doaj.org/article/f1b47bc24b3b4858a2abb5f90a7017c6
Publikováno v:
Cancer Informatics, Vol 20 (2021)
Background: The revolution in next-generation sequencing (NGS) technology has allowed easy access and sharing of high-throughput sequencing datasets of cancer cell lines and their integrative analyses. However, long-term passaging and culture conditi
Externí odkaz:
https://doaj.org/article/ade56b87e48a472c8152178fa93e9a36
Autor:
Krishnendu Guin, Yao Chen, Radha Mishra, Siti Rawaidah BM Muzaki, Bhagya C Thimmappa, Caoimhe E O'Brien, Geraldine Butler, Amartya Sanyal, Kaustuv Sanyal
Publikováno v:
eLife, Vol 9 (2020)
Centromeres of Candida albicans form on unique and different DNA sequences but a closely related species, Candida tropicalis, possesses homogenized inverted repeat (HIR)-associated centromeres. To investigate the mechanism of centromere type transiti
Externí odkaz:
https://doaj.org/article/3222a6969b794cbf81999eb29dd6de40
Autor:
Tushar Warrier, Chadi El Farran, Yingying Zeng, Benedict Shao Quan Ho, Don Loi Xu, Qiuye Bao, Zi Hao Zheng, Xuezhi Bi, Kelly Yu Sing Tan, Huck Hui Ng, Derrick Sek Tong Ong, Justin Jang Hann Chu, Amartya Sanyal, Melissa Jane Fullwood, James Collins, Hu Li, Jian Xu, Yuin-Han Loh
SETDB1 is a key regulator of lineage-specific genes and endogenous retroviral elements (ERVs) through its deposition of repressive H3K9me3 mark. Apart from its H3K9me3 regulatory role, SETDB1 has seldom been studied in terms of its other potential re
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::a095b68c3ab5551585bb1f5de6ffe3d2
https://doi.org/10.1101/2022.01.27.478011
https://doi.org/10.1101/2022.01.27.478011
Autor:
Tushar Warrier, Chadi El Farran, Yingying Zeng, Benedict Shao Quan Ho, Qiuye Bao, Zi Hao Zheng, Xuezhi Bi, Huck Hui Ng, Derrick Sek Tong Ong, Justin Jang Hann Chu, Amartya Sanyal, Melissa Jane Fullwood, James J Collins, Hu Li, Jian Xu, Yuin-Han Loh
Publikováno v:
Nucleic Acids Research, 50, 7326-7349
Nucleic Acids Research, 50, 13, pp. 7326-7349
Nucleic Acids Research, 50, 13, pp. 7326-7349
SETDB1 is a key regulator of lineage-specific genes and endogenous retroviral elements (ERVs) through its deposition of repressive H3K9me3 mark. Apart from its H3K9me3 regulatory role, SETDB1 has seldom been studied in terms of its other potential re
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::8bd233beb6192832526b725707db2e5f
https://doi.org/10.1093/nar/gkac531
https://doi.org/10.1093/nar/gkac531
Autor:
Lakshmi Sreekumar, Priya Jaitly, Bhagya C. Thimmappa, Kaustuv Sanyal, Yao Chen, Amartya Sanyal
Publikováno v:
Genetics
The molecular cues for CENPA positioning in epigenetically regulated centromeres is elusive. Candida albicans has small regional non-repetitive centromeres that do not harbor conventional heterochromatin. Deletion of native centromere leads to activa
Autor:
Kaustuv Sanyal, Geraldine Butler, Amartya Sanyal, Krishnendu Guin, Bhagya C. Thimmappa, Caoimhe E. O’Brien, Radha Mishra, Yao Chen, Siti Rawaidah B.M. Muzaki
Publikováno v:
eLife, Vol 9 (2020)
eLife
eLife
Centromeres of Candida albicans form on unique and different DNA sequences but a closely related species, Candida tropicalis, possesses homogenized inverted repeat (HIR)-associated centromeres. To investigate the mechanism of centromere type transiti
Autor:
Kaustuv Sanyal, Yao Chen, Siti Rawaidah Bm Muzaki, Caoimhe E. O’Brien, Bhagya C. Thimmappa, Geraldine Butler, Radha Mishra, Krishnendu Guin, Amartya Sanyal
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::97de71e68f1041b9a1c502d0773718e1
https://doi.org/10.7554/elife.58556.sa2
https://doi.org/10.7554/elife.58556.sa2
Background The widespread concern about genetic drift and cross-contamination of cell lines calls for a pressing need for their authentication. The current genetic techniques for authentication are time-consuming and require specific documentary stan
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::3130d35707675a693b4606a8c3b95f69
https://doi.org/10.21203/rs.2.18908/v1
https://doi.org/10.21203/rs.2.18908/v1