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pro vyhledávání: '"Almagro Armenteros Jj"'
MotivationLanguage modelling (LM) on biological sequences is an emergent topic in the field of bioinformatics. Current research has shown that language modelling of proteins can create context-dependent representations that can be applied to improve
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::8ba9fddfbb907d3e47076843c08fe807
Autor:
Ferrer Florensa A; Research Group for Genomic Epidemiology, DTU National Food Institute, Technical University of Denmark, Anker Engelunds Vej 1, 2800 Kongens Lyngby, Denmark., Almagro Armenteros JJ; Informatics and Predictive Sciences Research, Bristol Myers Squibb Company, Calle Isaac Newton 4, 41092 Sevilla, Spain., Nielsen H; Section for Bioinformatics, Department of Health Technology, Technical University of Denmark, Anker Engelunds Vej 1, 2800 Kongens Lyngby, Denmark., Aarestrup FM; Research Group for Genomic Epidemiology, DTU National Food Institute, Technical University of Denmark, Anker Engelunds Vej 1, 2800 Kongens Lyngby, Denmark., Clausen PTLC; Research Group for Genomic Epidemiology, DTU National Food Institute, Technical University of Denmark, Anker Engelunds Vej 1, 2800 Kongens Lyngby, Denmark.
Publikováno v:
NAR genomics and bioinformatics [NAR Genom Bioinform] 2024 Aug 16; Vol. 6 (3), pp. lqae106. Date of Electronic Publication: 2024 Aug 16 (Print Publication: 2024).
Autor:
Ødum MT; Section for Bioinformatics, Department of Health Technology, Technical University of Denmark, 2800 Kongens Lyngby, Denmark., Teufel F; Bioinformatics Centre, Department of Biology, University of Copenhagen, 2200 Copenhagen, Denmark.; Digital Science & Innovation, Novo Nordisk A/S, 2760 Måløv, Denmark., Thumuluri V; University of California, San Diego, CA 92093, USA., Almagro Armenteros JJ; Bristol Myers Squibb Company, Informatics and Predictive Sciences Research, Calle Isaac Newton 4, Sevilla 41092, Spain., Johansen AR; Department of Computer Science, Stanford University, Stanford, CA 94305, USA., Winther O; Bioinformatics Centre, Department of Biology, University of Copenhagen, 2200 Copenhagen, Denmark.; Department of Genomic Medicine, Rigshospitalet (Copenhagen University Hospital), 2100 Copenhagen, Denmark.; Section for Cognitive Systems, Department of Applied Mathematics and Computer Science, Technical University of Denmark, 2800 Kongens Lyngby, Denmark., Nielsen H; Section for Bioinformatics, Department of Health Technology, Technical University of Denmark, 2800 Kongens Lyngby, Denmark.
Publikováno v:
Nucleic acids research [Nucleic Acids Res] 2024 Jul 05; Vol. 52 (W1), pp. W215-W220.
Autor:
Teufel F; Department of Biology, University of Copenhagen, 2200 Copenhagen, Denmark.; Digital Science & Innovation, Novo Nordisk A/S, 2760 Måløv, Denmark., Gíslason MH; Department of Genomic Medicine, Copenhagen University Hospital/Rigshospitalet, 2100 Copenhagen, Denmark., Almagro Armenteros JJ; Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA.; Department of Biomedical Data Science, Stanford University, Stanford, CA 94305, USA., Johansen AR; Department of Computer Science, Stanford University School of Engineering, Stanford, CA 94305, USA., Winther O; Department of Biology, University of Copenhagen, 2200 Copenhagen, Denmark.; Department of Genomic Medicine, Copenhagen University Hospital/Rigshospitalet, 2100 Copenhagen, Denmark.; Department of Applied Mathematics and Computer Science, Technical University of Denmark, 2800 Kgs. Lyngby, Denmark., Nielsen H; Department of Health Technology, Technical University of Denmark, 2800 Kgs. Lyngby, Denmark.
Publikováno v:
NAR genomics and bioinformatics [NAR Genom Bioinform] 2023 Oct 16; Vol. 5 (4), pp. lqad088. Date of Electronic Publication: 2023 Oct 16 (Print Publication: 2023).
Autor:
Pérez-Alós L; Laboratory of Molecular Medicine, Department of Clinical Immunology, Section 7631, Copenhagen University Hospital, Rigshospitalet, Copenhagen, Denmark. laura.perez.alos@regionh.dk., Hansen CB; Laboratory of Molecular Medicine, Department of Clinical Immunology, Section 7631, Copenhagen University Hospital, Rigshospitalet, Copenhagen, Denmark., Almagro Armenteros JJ; Department of Genetics, Stanford University School of Medicine, Stanford, 94305, CA, USA., Madsen JR; Laboratory of Molecular Medicine, Department of Clinical Immunology, Section 7631, Copenhagen University Hospital, Rigshospitalet, Copenhagen, Denmark., Heftdal LD; Viro-immunology Research Unit, Department of Infectious Diseases, Section 8632, Copenhagen University Hospital, Rigshospitalet, Copenhagen, Denmark.; Department of Haematology, Copenhagen University Hospital, Rigshospitalet, Copenhagen, Denmark., Hasselbalch RB; Department of Cardiology, Copenhagen University Hospital Herlev and Gentofte, Copenhagen, Denmark.; Department of Emergency Medicine, Copenhagen University Hospital Herlev and Gentofte, Copenhagen, Denmark., Pries-Heje MM; The Heart Center, Department of Cardiology, Copenhagen University Hospital, Rigshospitalet, Copenhagen, Denmark., Bayarri-Olmos R; Laboratory of Molecular Medicine, Department of Clinical Immunology, Section 7631, Copenhagen University Hospital, Rigshospitalet, Copenhagen, Denmark.; Recombinant Protein and Antibody Unit, Copenhagen University Hospital, Rigshospitalet, Copenhagen, Denmark., Jarlhelt I; Laboratory of Molecular Medicine, Department of Clinical Immunology, Section 7631, Copenhagen University Hospital, Rigshospitalet, Copenhagen, Denmark., Hamm SR; Viro-immunology Research Unit, Department of Infectious Diseases, Section 8632, Copenhagen University Hospital, Rigshospitalet, Copenhagen, Denmark., Møller DL; Viro-immunology Research Unit, Department of Infectious Diseases, Section 8632, Copenhagen University Hospital, Rigshospitalet, Copenhagen, Denmark., Sørensen E; Department of Clinical Immunology, Section 2034, Copenhagen University Hospital, Rigshospitalet, Copenhagen, Denmark., Ostrowski SR; Department of Clinical Immunology, Section 2034, Copenhagen University Hospital, Rigshospitalet, Copenhagen, Denmark.; Department of Clinical Medicine, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark., Frikke-Schmidt R; Department of Clinical Medicine, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark.; Department of Clinical Biochemistry, Copenhagen University Hospital, Rigshospitalet, Copenhagen, Denmark., Hilsted LM; Department of Clinical Biochemistry, Copenhagen University Hospital, Rigshospitalet, Copenhagen, Denmark., Bundgaard H; The Heart Center, Department of Cardiology, Copenhagen University Hospital, Rigshospitalet, Copenhagen, Denmark.; Department of Clinical Medicine, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark., Nielsen SD; Viro-immunology Research Unit, Department of Infectious Diseases, Section 8632, Copenhagen University Hospital, Rigshospitalet, Copenhagen, Denmark.; Department of Clinical Medicine, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark., Iversen KK; Department of Cardiology, Copenhagen University Hospital Herlev and Gentofte, Copenhagen, Denmark.; Department of Emergency Medicine, Copenhagen University Hospital Herlev and Gentofte, Copenhagen, Denmark.; Department of Clinical Medicine, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark., Garred P; Laboratory of Molecular Medicine, Department of Clinical Immunology, Section 7631, Copenhagen University Hospital, Rigshospitalet, Copenhagen, Denmark. peter.garred@regionh.dk.; Department of Clinical Medicine, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark. peter.garred@regionh.dk.
Publikováno v:
Nature communications [Nat Commun] 2023 Sep 12; Vol. 14 (1), pp. 5624. Date of Electronic Publication: 2023 Sep 12.
Autor:
Thumuluri V; Indian Institute of Technology Madras, Chennai 600036, India., Almagro Armenteros JJ; Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen 2200, Denmark.; Department of Genetics, Stanford University School of Medicine, Stanford 94305, CA, USA., Johansen AR; Department of Computer Science, Stanford University, Stanford 94305, CA, USA.; Department of Genetics, Stanford University School of Medicine, Stanford 94305, CA, USA., Nielsen H; Section for Bioinformatics, Department of Health Technology, Technical University of Denmark, Kongens Lyngby 2800, Denmark., Winther O; Center for Genomic Medicine, Rigshospitalet (Copenhagen University Hospital), Copenhagen 2100, Denmark.; Department of Biology, Bioinformatics Centre, University of Copenhagen, Copenhagen 2200, Denmark.; Section for Cognitive Systems, Department of Applied Mathematics and Computer Science, Technical University of Denmark, Kongens Lyngby 2800, Denmark.
Publikováno v:
Nucleic acids research [Nucleic Acids Res] 2022 Jul 05; Vol. 50 (W1), pp. W228-W234.
Autor:
Teufel F; Section for Bioinformatics, Department of Health Technology, Technical University of Denmark, Kongens Lyngby, Denmark.; Department of Biosystems Science and Engineering, ETH Zurich, Basel, Switzerland., Almagro Armenteros JJ; Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark., Johansen AR; Department of Computer Science, Stanford University, Stanford, CA, USA., Gíslason MH; Center for Genomic Medicine, Rigshospitalet (Copenhagen University Hospital), Copenhagen, Denmark., Pihl SI; Section for Bioinformatics, Department of Health Technology, Technical University of Denmark, Kongens Lyngby, Denmark., Tsirigos KD; EMBL-EBI, Wellcome Genome Campus, Cambridge, UK., Winther O; Center for Genomic Medicine, Rigshospitalet (Copenhagen University Hospital), Copenhagen, Denmark.; Department of Biology, Bioinformatics Centre, University of Copenhagen, Copenhagen, Denmark.; Section for Cognitive Systems, Department of Applied Mathematics and Computer Science, Technical University of Denmark, Kongens Lyngby, Denmark., Brunak S; Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark., von Heijne G; Department of Biochemistry and Biophysics, Stockholm University, Stockholm, Sweden.; Science for Life Laboratory, Stockholm University, Solna, Sweden., Nielsen H; Section for Bioinformatics, Department of Health Technology, Technical University of Denmark, Kongens Lyngby, Denmark. henni@dtu.dk.
Publikováno v:
Nature biotechnology [Nat Biotechnol] 2022 Jul; Vol. 40 (7), pp. 1023-1025. Date of Electronic Publication: 2022 Jan 03.
Autor:
Hamm SR; Viro-Immunology Research Unit, Department of Infectious Diseases, Rigshospitalet, Copenhagen University Hospital, Copenhagen, Denmark., Møller DL; Viro-Immunology Research Unit, Department of Infectious Diseases, Rigshospitalet, Copenhagen University Hospital, Copenhagen, Denmark., Pérez-Alós L; Laboratory of Molecular Medicine, Department of Clinical Immunology, Rigshospitalet, Copenhagen University Hospital, Copenhagen, Denmark., Hansen CB; Laboratory of Molecular Medicine, Department of Clinical Immunology, Rigshospitalet, Copenhagen University Hospital, Copenhagen, Denmark., Pries-Heje MM; Department of Cardiology, Rigshospitalet, Copenhagen University Hospital, Copenhagen, Denmark., Heftdal LD; Viro-Immunology Research Unit, Department of Infectious Diseases, Rigshospitalet, Copenhagen University Hospital, Copenhagen, Denmark.; Department of Hematology, Rigshospitalet, Copenhagen University Hospital, Copenhagen, Denmark., Hasselbalch RB; Department of Cardiology, Herlev and Gentofte Hospital, Copenhagen University Hospital, Copenhagen, Denmark., Fogh K; Department of Cardiology, Herlev and Gentofte Hospital, Copenhagen University Hospital, Copenhagen, Denmark., Madsen JR; Laboratory of Molecular Medicine, Department of Clinical Immunology, Rigshospitalet, Copenhagen University Hospital, Copenhagen, Denmark., Almagro Armenteros JJ; Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark., Knudsen AD; Viro-Immunology Research Unit, Department of Infectious Diseases, Rigshospitalet, Copenhagen University Hospital, Copenhagen, Denmark., Poulsen JR; Viro-Immunology Research Unit, Department of Infectious Diseases, Rigshospitalet, Copenhagen University Hospital, Copenhagen, Denmark., Frikke-Schmidt R; Department of Clinical Biochemistry, Rigshospitalet, Copenhagen University Hospital, Copenhagen, Denmark.; Department of Clinical Medicine, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark., Hilsted LM; Department of Clinical Biochemistry, Rigshospitalet, Copenhagen University Hospital, Copenhagen, Denmark., Sørensen E; The Blood Bank, Department of Clinical Immunology, Rigshospitalet, Copenhagen University Hospital, Copenhagen, Denmark., Ostrowski SR; Department of Clinical Medicine, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark.; The Blood Bank, Department of Clinical Immunology, Rigshospitalet, Copenhagen University Hospital, Copenhagen, Denmark., Harboe ZB; Department of Clinical Medicine, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark.; Department of Pulmonary and Infectious Diseases, Hospital of North Zealand, Copenhagen University Hospital, Hillerød, Denmark., Perch M; Department of Cardiology, Rigshospitalet, Copenhagen University Hospital, Copenhagen, Denmark.; Department of Clinical Medicine, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark., Sørensen SS; Department of Clinical Medicine, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark.; Department of Nephrology, Rigshospitalet, Copenhagen University Hospital, Copenhagen, Denmark., Rasmussen A; Department of Surgical Gastroenterology, Rigshospitalet, Copenhagen University Hospital, Copenhagen, Denmark., Bundgaard H; Department of Cardiology, Rigshospitalet, Copenhagen University Hospital, Copenhagen, Denmark.; Department of Clinical Medicine, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark., Garred P; Laboratory of Molecular Medicine, Department of Clinical Immunology, Rigshospitalet, Copenhagen University Hospital, Copenhagen, Denmark.; Department of Clinical Medicine, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark., Iversen K; Department of Cardiology, Herlev and Gentofte Hospital, Copenhagen University Hospital, Copenhagen, Denmark.; Department of Clinical Medicine, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark.; Department of Emergency Medicine, Herlev and Gentofte Hospital, Copenhagen University Hospital, Copenhagen, Denmark., Nielsen SD; Viro-Immunology Research Unit, Department of Infectious Diseases, Rigshospitalet, Copenhagen University Hospital, Copenhagen, Denmark.; Department of Clinical Medicine, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark.; Department of Surgical Gastroenterology, Rigshospitalet, Copenhagen University Hospital, Copenhagen, Denmark.
Publikováno v:
Frontiers in immunology [Front Immunol] 2022 Feb 23; Vol. 13, pp. 832501. Date of Electronic Publication: 2022 Feb 23 (Print Publication: 2022).
Autor:
Thumuluri V; Indian Institute of Technology Madras, India., Martiny HM; Research Group for Genomic Epidemiology, National Food Institute, Technical University of Denmark, Lyngby 2800, Denmark., Almagro Armenteros JJ; Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, 2200 Copenhagen, Denmark., Salomon J; Enzyme Research, Novozymes A/S, Lyngby 2800, Denmark., Nielsen H; Department of Health Technology, Technical University of Denmark, Lyngby 2800, Denmark., Johansen AR; Department of Computer Science, Stanford University, Stanford, CA 94305, USA.; Department of Genetics, Stanford University School of Medicine, Stanford, CA, USA.
Publikováno v:
Bioinformatics (Oxford, England) [Bioinformatics] 2022 Jan 27; Vol. 38 (4), pp. 941-946.
Autor:
Almagro Armenteros JJ; Department of Health Technology, Section for Bioinformatics, Technical University of Denmark, Kongen Lyngby, Denmark., Salvatore M; Science for Life Laboratory, Solna, Sweden.; Department of Biochemistry and Biophysics, Stockholm University, Stockholm, Sweden., Emanuelsson O; Science for Life Laboratory, Solna, Sweden.; Department of Gene Technology, School of Engineering Sciences in Biotechnology, Chemistry and Health, KTH-Royal Institute of Technology, Stockholm, Sweden., Winther O; DTU Compute, Technical University of Denmark, Kongen Lyngby, Denmark.; Computational and RNA Biology, University of Copenhagen, Copenhagen, Denmark.; Centre for Genomic Medicine, Rigshospitalet, Copenhagen University Hospital, Copenhagen, Denmark., von Heijne G; Science for Life Laboratory, Solna, Sweden.; Department of Biochemistry and Biophysics, Stockholm University, Stockholm, Sweden., Elofsson A; Science for Life Laboratory, Solna, Sweden arne@bioinfo.se.; Department of Biochemistry and Biophysics, Stockholm University, Stockholm, Sweden., Nielsen H; Department of Health Technology, Section for Bioinformatics, Technical University of Denmark, Kongen Lyngby, Denmark henni@dtu.dk.
Publikováno v:
Life science alliance [Life Sci Alliance] 2019 Sep 30; Vol. 2 (5). Date of Electronic Publication: 2019 Sep 30 (Print Publication: 2019).