Zobrazeno 1 - 10
of 25
pro vyhledávání: '"Allison N. Pearson"'
Autor:
Luis E. Valencia, Matthew R. Incha, Matthias Schmidt, Allison N. Pearson, Mitchell G. Thompson, Jacob B. Roberts, Marina Mehling, Kevin Yin, Ning Sun, Asun Oka, Patrick M. Shih, Lars M. Blank, John Gladden, Jay D. Keasling
Publikováno v:
Communications Biology, Vol 5, Iss 1, Pp 1-12 (2022)
Pseudomonas putida has been engineered to produce medium chain length oleochemicals, including medium chain length free fatty acids and their ester forms, compounds which may be useful as biodiesel blending agents.
Externí odkaz:
https://doaj.org/article/3f49756fdf144786a1e7fe4a61fae5c4
Autor:
Allison N. Pearson, Mitchell G. Thompson, Liam D. Kirkpatrick, Cindy Ho, Khanh M. Vuu, Lucas M. Waldburger, Jay D. Keasling, Patrick M. Shih
Publikováno v:
Microbiology Spectrum, Vol 11, Iss 3 (2023)
ABSTRACT The pGinger suite of expression plasmids comprises 43 plasmids that will enable precise constitutive and inducible gene expression in a wide range of Gram-negative bacterial species. Constitutive vectors are composed of 16 synthetic constitu
Externí odkaz:
https://doaj.org/article/507d9ad823c84c42afd7fa6b1eead74d
Autor:
Matthew R. Incha, Mitchell G. Thompson, Jacquelyn M. Blake-Hedges, Yuzhong Liu, Allison N. Pearson, Matthias Schmidt, Jennifer W. Gin, Christopher J. Petzold, Adam M. Deutschbauer, Jay D. Keasling
Publikováno v:
Metabolic Engineering Communications, Vol 10, Iss , Pp e00119- (2020)
Pseudomonas putida is a saprophytic bacterium with robust metabolisms and strong solvent tolerance making it an attractive host for metabolic engineering and bioremediation. Due to its diverse carbon metabolisms, its genome encodes an array of protei
Externí odkaz:
https://doaj.org/article/3016232893ed4beb89a26f917ba8cee3
Autor:
Mitchell G. Thompson, William M. Moore, Niklas F. C. Hummel, Allison N. Pearson, Collin R. Barnum, Henrik V. Scheller, Patrick M. Shih
Publikováno v:
BioDesign Research, Vol 2020 (2020)
Agrobacterium tumefaciens is an important tool in plant biotechnology due to its natural ability to transfer DNA into the genomes of host plants. Genetic manipulations of A. tumefaciens have yielded considerable advances in increasing transformationa
Externí odkaz:
https://doaj.org/article/1f0af279803745eeaaed781e1689ad12
Autor:
Mitchell G. Thompson, Luis E. Valencia, Jacquelyn M. Blake-Hedges, Pablo Cruz-Morales, Alexandria E. Velasquez, Allison N. Pearson, Lauren N. Sermeno, William A. Sharpless, Veronica T. Benites, Yan Chen, Edward E.K. Baidoo, Christopher J. Petzold, Adam M. Deutschbauer, Jay D. Keasling
Publikováno v:
Metabolic Engineering Communications, Vol 9, Iss , Pp - (2019)
Pseudomonas putida is a promising bacterial chassis for metabolic engineering given its ability to metabolize a wide array of carbon sources, especially aromatic compounds derived from lignin. However, this omnivorous metabolism can also be a hindran
Externí odkaz:
https://doaj.org/article/3cb30374804143699fff66873aeaa395
Autor:
Jacob B Roberts, Alberto A Nava, Allison N Pearson, Matthew R Incha, Luis E Valencia, Melody Ma, Abhay Rao, Jay D Keasling
Publikováno v:
PLoS Computational Biology, Vol 20, Iss 2, p e1011171 (2024)
Foldy is a cloud-based application that allows non-computational biologists to easily utilize advanced AI-based structural biology tools, including AlphaFold and DiffDock. With many deployment options, it can be employed by individuals, labs, univers
Externí odkaz:
https://doaj.org/article/2575bc688d0540fea5c4ae20c9273503
Autor:
Jacob B. Roberts, Alberto A. Nava, Allison N. Pearson, Matthew R. Incha, Luis E. Valencia, Melody Ma, Abhay Rao, Jay D. Keasling
Foldy is a cloud-based application that allows non-expert scientists to easily access and utilize advanced AI-based structural biology tools, including AlphaFold and DiffDock. Built on Kubernetes, it can be deployed by universities, departments, and
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::a35f7717553e8e8b792693e229f4201d
https://doi.org/10.1101/2023.05.11.540333
https://doi.org/10.1101/2023.05.11.540333
Autor:
Matthias Schmidt, Allison N. Pearson, Matthew R. Incha, Mitchell G. Thompson, Edward E. K. Baidoo, Ramu Kakumanu, Aindrila Mukhopadhyay, Patrick M. Shih, Adam M. Deutschbauer, Lars M. Blank, Jay D. Keasling
Publikováno v:
Appl Environ Microbiol
Pseudomonas putida KT2440 has long been studied for its diverse and robust metabolisms, yet many genes and proteins imparting these growth capacities remain uncharacterized. Using pooled mutant fitness assays, we identified genes and proteins involve
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::2c87fa22db9d6df8eb04251dc4d53408
https://doi.org/10.1101/2021.12.09.472016
https://doi.org/10.1101/2021.12.09.472016
Publikováno v:
Microbiology Resource Announcements
Mycobacterium sp. strain JC1 DSM3803 is one of the few known bacteria predicted to possess the xylulose monophosphate (XuMP) pathway of C1 carbon assimilation. The draft genome is 7,921,603 bp with a GC content of 66.88% and will allow more in depth
Autor:
Yuzhong Liu, Robert W. Haushalter, Matthew R. Incha, Patrick M. Shih, Lars M. Blank, Patrick Lichtner, Pablo Cruz-Morales, Mitchell G. Thompson, Jay D. Keasling, Aindrila Mukhopadhyay, William A. Sharpless, Allison N. Pearson, Rohith N. Krishna, Christopher B. Eiben, Jacquelyn M. Blake-Hedges, Catharine A. Adams, Adam M. Deutschbauer, M. Schmidt
Publikováno v:
Applied and Environmental Microbiology, vol 87, iss 8
Appl Environ Microbiol
Appl Environ Microbiol
Volume 86, no. 21, 2020, e01665-20, . Readers should note that when the authors created the deletion mutant of PP\_2675, they deleted the entire region between the gene’s start and stop codons. However, this also deleted the DNA that codes for the
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f6848b4de2cc3683b73d70ce77ca0940
https://escholarship.org/uc/item/6k9206w6
https://escholarship.org/uc/item/6k9206w6