Regulation of Root Angle and Gravitropism

Autor: Ted W. Toal, Mily Ron, Donald Gibson, Kaisa Kajala, Bessie Splitt, Logan S. Johnson, Nathan D. Miller, Radka Slovak, Allison Gaudinier, Rohan Patel, Miguel de Lucas, Nicholas J. Provart, Edgar P. Spalding, Wolfgang Busch, Daniel J. Kliebenstein, Siobhan M. Brady

Publikováno v: G3: Genes, Genomes, Genetics, Vol 8, Iss 12, Pp 3841-3855 (2018)

Regulation of plant root angle is critical for obtaining nutrients and water and is an important trait for plant breeding. A plant’s final, long-term root angle is the net result of a complex series of decisions made by a root tip in response to ch

Externí odkaz: https://doaj.org/article/6454f2a504c14ebf99f8334fc267ebbf

A genome-scale TF-DNA interaction network of transcriptional regulation of Arabidopsis primary and specialized metabolism

Autor: Xue Zhou, Baohua Li, Daniel J. Kliebenstein, Richard Ngo, Tayah Bolt, Michelle Tang, Allison Gaudinier, Neiman Cruz, Siobhan M. Brady, Jia Jie Li, Caitlin Clark-Wiest

Publikováno v: Molecular systems biology, vol 17, iss 11
Molecular Systems Biology
Molecular Systems Biology, Vol 17, Iss 11, Pp n/a-n/a (2021)
Tang, M, Li, B, Zhou, X, Bolt, T, Li, J J, Cruz, N, Gaudinier, A, Ngo, R, Clark-Wiest, C, Kliebenstein, D J & Brady, S M 2021, ' A genome-scale TF–DNA interaction network of transcriptional regulation of Arabidopsis primary and specialized metabolism ', Molecular Systems Biology, vol. 17, no. 11, e10625 . https://doi.org/10.15252/msb.202110625

Plant metabolism is more complex relative to individual microbes. In single‐celled microbes, transcriptional regulation by single transcription factors (TFs) is sufficient to shift primary metabolism. Corresponding genome‐level transcriptional re

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::b1907e65d201a5ac848aba529eac56b3
https://escholarship.org/uc/item/06v081hr

Proteome-wide, Structure-Based Prediction of Protein-Protein Interactions/New Molecular Interactions Viewer

Autor: Nicholas J. Provart, Björn Usadel, Eddi Esteban, Matthew Ierullo, Vincent Lau, Allison Gaudinier, Richard Song, Ruth Grene, Mike Tyers, Kara Dolinski, Hardeep Nahal, Asher Pasha, Siobhan M. Brady, Teeratham Sivieng, Yingzhou Wu, Rose Oughtred, Shaowei Dong

Publikováno v: Plant Physiology. 179:1893-1907

Determining the complete Arabidopsis (Arabidopsis thaliana) protein-protein interaction network is essential for understanding the functional organization of the proteome. Numerous small-scale studies and a couple of large-scale ones have elucidated

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::70ae2effaabdce3233333f10cba7c304
https://doi.org/10.1104/pp.18.01216

A bipartite transcription factor module controlling expression in the bundle sheath of Arabidopsis thaliana

Autor: Anne-Maarit Bågman, Jana Kneřová, Steven J. Burgess, Sean R. Stevenson, Patrick J Dickinson, Allison Gaudinier, Julian M. Hibberd, Marek Szecowka, Siobhan M. Brady, Hugh Mulvey

Publikováno v: Nature Plants

In multicellular organisms the specification of distinct tissues within organs allows compartmentation of complex processes. However, the mechanisms that allow gene expression to be restricted to such tissues are poorly understood. To better understa

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ce244ed8cb9cbe4b63f3a5962669a45b

Complete substitution of a secondary cell wall with a primary cell wall in Arabidopsis

Autor: Kouki Yoshida, Allison Gaudinier, Marc Somssich, Ting Wang, Shawn D. Mansfield, Nobutaka Mitsuda, Kimie Atsuzawa, Staffan Persson, Yasuko Kaneko, Miyuki T. Nakata, Siobhan M. Brady, Anne-Maarit Bågman, Shingo Sakamoto, Faride Unda

Publikováno v: Nature Plants

The bulk of a plant's biomass, termed secondary cell walls, accumulates in woody xylem tissues and is largely recalcitrant to biochemical degradation and saccharification1. By contrast, primary cell walls, which are chemically distinct, flexible and

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::4bc736ec957ae48468b58ec48e2da56b
https://doi.org/10.1038/s41477-018-0260-4