Zobrazeno 1 - 10
of 55
pro vyhledávání: '"Allison Black"'
Autor:
Hanna N. Oltean, Allison Black, Stephanie M. Lunn, Nailah Smith, Allison Templeton, Elyse Bevers, Lynae Kibiger, Melissa Sixberry, Josina B. Bickel, James P. Hughes, Scott Lindquist, Janet G. Baseman, Trevor Bedford
Publikováno v:
BMC Public Health, Vol 24, Iss 1, Pp 1-12 (2024)
Abstract Background Long-term care facilities (LTCFs) are vulnerable to disease outbreaks. Here, we jointly analyze SARS-CoV-2 genomic and paired epidemiologic data from LTCFs and surrounding communities in Washington state (WA) to assess transmissio
Externí odkaz:
https://doaj.org/article/ab8ecfbcc2504dbfa6dac0d4ec7acfa6
Autor:
Fyezah Jehan, Patrick Ayscue, Waqasuddin Khan, Furqan Kabir, Imran Nisar, Allison Black, Samiah Kanwar, Fatima Aziz, Sahrish Muneer, Adil Kalam, Mehdia Nadeem Rajab Ali, Nadia Ansari, Manu Vanaerschot, Vida Ahyong, Liz Fahsbender, Katrina Kalantar, Abigail Glascock, Juliana Gil, Cristina Tato
Publikováno v:
BMJ Global Health, Vol 8, Iss 11 (2023)
Next-generation sequencing technology has revolutionised pathogen surveillance over the last two decades. However, the benefits are not equitably distributed, with developing countries lagging far behind in acquiring the required technology and analy
Externí odkaz:
https://doaj.org/article/104801a489db4920b20e82f9fb7acc4b
Autor:
Shannan N Rich, Veronica Richards, Carla Mavian, Brittany Rife Magalis, Nathan Grubaugh, Sonja A Rasmussen, Simon Dellicour, Bram Vrancken, Christine Carrington, Rebecca Fisk-Hoffman, Demi Danso-Odei, Daniel Chacreton, Jerne Shapiro, Marie Nancy Seraphin, Crystal Hepp, Allison Black, Ann Dennis, Nídia Sequeira Trovão, Anne-Mieke Vandamme, Angela Rasmussen, Michael Lauzardo, Natalie Dean, Marco Salemi, Mattia Prosperi
Publikováno v:
JMIR Formative Research, Vol 7, p e39409 (2023)
BackgroundIn the wake of the SARS-CoV-2 pandemic, scientists have scrambled to collect and analyze SARS-CoV-2 genomic data to inform public health responses to COVID-19 in real time. Open source phylogenetic and data visualization platforms for monit
Externí odkaz:
https://doaj.org/article/8e1231c5e61f4765b97b29e582fdd1b1
Autor:
Jover Lee, James Hadfield, Allison Black, Thomas R. Sibley, Richard A. Neher, Trevor Bedford, John Huddleston
Publikováno v:
Frontiers in Bioinformatics, Vol 3 (2023)
Seasonal influenza vaccines must be updated regularly to account for mutations that allow influenza viruses to escape our existing immunity. A successful vaccine should represent the genetic diversity of recently circulating viruses and induce antibo
Externí odkaz:
https://doaj.org/article/9ca51cf8c6e04b24895a9307c919c7c4
Autor:
Gunnar Stoddard, Allison Black, Patrick Ayscue, Dan Lu, Jack Kamm, Karan Bhatt, Lienna Chan, Amy L Kistler, Joshua Batson, Angela Detweiler, Michelle Tan, Norma Neff, Joseph L DeRisi, Jeremy Corrigan
Publikováno v:
BMC Public Health, Vol 22, Iss 1, Pp 1-12 (2022)
Abstract Background During the COVID-19 pandemic within the United States, much of the responsibility for diagnostic testing and epidemiologic response has relied on the action of county-level departments of public health. Here we describe the integr
Externí odkaz:
https://doaj.org/article/5fa5a43e5c5c44af83dd47b0bb5ad39b
Autor:
Lusajo Mwakibete, Saki Takahashi, Vida Ahyong, Allison Black, John Rek, Isaac Ssewanyana, Moses Kamya, Grant Dorsey, Prasanna Jagannathan, Isabel Rodríguez-Barraquer, Cristina M Tato, Bryan Greenhouse
Publikováno v:
PLOS Global Public Health, Vol 3, Iss 5, p e0001675 (2023)
Causes of non-malarial fevers in sub-Saharan Africa remain understudied. We hypothesized that metagenomic next-generation sequencing (mNGS), which allows for broad genomic-level detection of infectious agents in a biological sample, can systematicall
Externí odkaz:
https://doaj.org/article/41fafc9dc1a84442869f2a38416b1de8
Autor:
Gilberto A. Santiago, Chaney C. Kalinich, Fabiola Cruz-López, Glenda L. González, Betzabel Flores, Aaron Hentoff, Keyla N. Charriez, Joseph R. Fauver, Laura E. Adams, Tyler M. Sharp, Allison Black, Trevor Bedford, Esther Ellis, Brett Ellis, Steve H. Waterman, Gabriela Paz-Bailey, Nathan D. Grubaugh, Jorge L. Muñoz-Jordán
Publikováno v:
Emerging Infectious Diseases, Vol 27, Iss 11, Pp 2971-2973 (2021)
We reconstructed the 2016–2017 Zika virus epidemic in Puerto Rico by using complete genomes to uncover the epidemic’s origin, spread, and evolutionary dynamics. Our study revealed that the epidemic was propelled by multiple introductions that spr
Externí odkaz:
https://doaj.org/article/3a1a5e1028a2401aa3e6565fa2048be7
Autor:
Denise Lopez, Jill Roberts, Marie Bourgeois, Joshua Kootstra, Sharon Minnick, Allison Black, Joshua Mauss, Nick Flores
Publikováno v:
PLoS ONE, Vol 17, Iss 2, p e0264008 (2022)
The C29197T mutation is one of 4 point mutations known to cause N-gene target failure (NGTF) in the Xpert Xpress SARS-CoV-2 and Xpert Omni SARS-CoV-2 assays from Cepheid (Sunnyvale, CA). We describe a high local prevalence in January of 8.5% (CI 4.9-
Externí odkaz:
https://doaj.org/article/3d85d95deca54842b190d62b472ab307
Autor:
Allison Black, Louise H. Moncla, Katherine Laiton-Donato, Barney Potter, Lissethe Pardo, Angelica Rico, Catalina Tovar, Diana P. Rojas, Ira M. Longini, M. Elizabeth Halloran, Dioselina Peláez-Carvajal, Juan D. Ramírez, Marcela Mercado-Reyes, Trevor Bedford
Publikováno v:
BMC Infectious Diseases, Vol 19, Iss 1, Pp 1-11 (2019)
Abstract Background Colombia was the second most affected country during the American Zika virus (ZIKV) epidemic, with over 109,000 reported cases. Despite the scale of the outbreak, limited genomic sequence data were available from Colombia. We soug
Externí odkaz:
https://doaj.org/article/29ad5bd2f2464fefb9bdf9061d06fe23
Autor:
Louise H Moncla, Allison Black, Chas DeBolt, Misty Lang, Nicholas R Graff, Ailyn C Pérez-Osorio, Nicola F Müller, Dirk Haselow, Scott Lindquist, Trevor Bedford
Publikováno v:
eLife, Vol 10 (2021)
In 2016/2017, Washington State experienced a mumps outbreak despite high childhood vaccination rates, with cases more frequently detected among school-aged children and members of the Marshallese community. We sequenced 166 mumps virus genomes collec
Externí odkaz:
https://doaj.org/article/20d19ea3a0d444319360e335f30be6e4