Zobrazeno 1 - 8
of 8
pro vyhledávání: '"Alla L. Lapidus"'
Autor:
Aleksei O. Zverev, Anastasiia K. Kimeklis, Olga V. Orlova, Tatiana O. Lisina, Arina A. Kichko, Alexandr G. Pinaev, Alla L. Lapidus, Evgeny V. Abakumov, Evgeny E. Andronov
Publikováno v:
Microorganisms, Vol 12, Iss 11, p 2276 (2024)
For the targeted selection of microbial communities that provide cellulose degradation, soil samples containing cellulolytic microorganisms and specific plant residues as a substrate can be used. The details of this process have not been studied: in
Externí odkaz:
https://doaj.org/article/952d2b7eb6354578bb89fc047bf22308
Autor:
Daria Shafranskaya, Varsha Kale, Rob Finn, Alla L. Lapidus, Anton Korobeynikov, Andrey D. Prjibelski
Publikováno v:
Frontiers in Microbiology, Vol 13 (2022)
While metagenome sequencing may provide insights on the genome sequences and composition of microbial communities, metatranscriptome analysis can be useful for studying the functional activity of a microbiome. RNA-Seq data provides the possibility to
Externí odkaz:
https://doaj.org/article/9ef2074a7aee4e6bb073df2d16b72d7e
Autor:
Alla L. Lapidus, Anton I. Korobeynikov
Publikováno v:
Frontiers in Microbiology, Vol 12 (2021)
Metagenomics is a segment of conventional microbial genomics dedicated to the sequencing and analysis of combined genomic DNA of entire environmental samples. The most critical step of the metagenomic data analysis is the reconstruction of individual
Externí odkaz:
https://doaj.org/article/cf968758c03643d89fcf2e7d41b44e7d
Autor:
Emily Denise Melton, Dimitry Y. Sorokin, Lex Overmars, Alla L. Lapidus, Manoj Pillay, Natalia Ivanova, Tijana Glavina del Rio, Nikos C. Kyrpides, Tanja Woyke, Gerard Muyzer
Publikováno v:
Standards in Genomic Sciences, Vol 12, Iss 1, Pp 1-9 (2017)
Abstract Dethiobacter alkaliphilus strain AHT1T is an anaerobic, sulfidogenic, moderately salt-tolerant alkaliphilic chemolithotroph isolated from hypersaline soda lake sediments in northeastern Mongolia. It is a Gram-positive bacterium with low GC c
Externí odkaz:
https://doaj.org/article/33a266c477da46bfb1c64d5a7ba4138a
Autor:
Andrey D. Prjibelski, Alla Mikheenko, Anoushka Joglekar, Alexander Smetanin, Julien Jarroux, Alla L. Lapidus, Hagen U. Tilgner
Publikováno v:
Nature Biotechnology.
Annotating newly sequenced genomes and determining alternative isoforms from long-read RNA data are complex and incompletely solved problems. Here we present IsoQuant—a computational tool using intron graphs that accurately reconstructs transcripts
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::d086ea0ea66b74bc54c8b973460863f8
https://doi.org/10.1038/s41587-022-01565-y
https://doi.org/10.1038/s41587-022-01565-y
Autor:
Andrey D, Prjibelski, Alla, Mikheenko, Anoushka, Joglekar, Alexander, Smetanin, Julien, Jarroux, Alla L, Lapidus, Hagen U, Tilgner
Publikováno v:
Nature biotechnology.
Annotating newly sequenced genomes and determining alternative isoforms from long-read RNA data are complex and incompletely solved problems. Here we present IsoQuant-a computational tool using intron graphs that accurately reconstructs transcripts b
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=pmid________::168c77e18dba7578c65465a5e80aa908
https://pubmed.ncbi.nlm.nih.gov/36593406
https://pubmed.ncbi.nlm.nih.gov/36593406
Autor:
Jessica R, Sieber, David R, Sims, Cliff, Han, Edwin, Kim, Athanasios, Lykidis, Alla L, Lapidus, Erin, McDonnald, Lars, Rohlin, David E, Culley, Robert, Gunsalus, Michael J, McInerney
Publikováno v:
Environmental microbiology. 12(8)
Syntrophomonas wolfei is a specialist, evolutionarily adapted for syntrophic growth with methanogens and other hydrogen- and/or formate-using microorganisms. This slow-growing anaerobe has three putative ribosome RNA operons, each of which has 16S rR
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=pmid________::91e09d1ebea1d1abbb5b690fdafac4cb
https://pubmed.ncbi.nlm.nih.gov/21966920
https://pubmed.ncbi.nlm.nih.gov/21966920