Výsledky vyhledávání - "Ali Ghaffaari"

Fully-sensitive seed finding in sequence graphs using a hybrid index

Publikováno v: Bioinformatics
ISMB/ECCB 2019 Proceedings

MotivationSequence graphs are versatile data structures that are, for instance, able to represent the genetic variation found in a population and to facilitate genome assembly. Read mapping to sequence graphs constitutes an important step for many ap

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::4eeb0369012de1bbb390185312823ccc
http://europepmc.org/articles/PMC6612829

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Pangenome graphs

Autor: Jordan M. Eizenga, Adam M. Novak, Jonas A. Sibbesen, Simon Heumos, Ali Ghaffaari, Glenn Hickey, Xian Chang, Josiah D. Seaman, Robin Rounthwaite, Jana Ebler, Mikko Rautiainen, Shilpa Garg, Benedict Paten, Tobias Marschall, Jouni Sirén, Erik Garrison

Publikováno v: Annu Rev Genomics Hum Genet

Low-cost whole-genome assembly has enabled the collection of haplotype-resolved pangenomes for numerous organisms. In turn, this technological change is encouraging the development of methods that can precisely address the sequence and variation desc

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::42dc75116426015ddeb1bfcac6d1686d
https://europepmc.org/articles/PMC8006571/

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Computational pan-genomics : Status, promises and challenges

Autor: Lodewyk F. A. Wessels, Jan O. Korbel, Jasmijn A. Baaijens, Francesca Chiaromonte, Gunnar W. Klau, Kai Ye, Alexander Schönhuth, Francesca D. Ciccarelli, Tobias Marschall, Robin Cijvat, Matthias Schlesner, Adam M. Novak, Eleazar Eskin, Ashley D. Sanders, Sven Rahmann, Carl Shneider, Wigard P. Kloosterman, Knut Reinert, Eric-Wubbo Lameijer, Sandra Smit, Benedict Paten, Mohammed El-Kebir, Valentina Boeva, Evan E. Eichler, Cornelia M. van Duijn, Can Alkan, Jeroen de Ridder, Benjamin Langmead, Dick de Ridder, Jiayin Wang, David Porubsky, Fabio Vandin, Erwin Datema, Ben Raphael, Paul Kersey, Nadia Pisanti, Corinna Ernst, Klaasjan G. Ouwens, Y. Zhang, Thomas Abeel, Erik Garrison, Veli Mäkinen, Paul I.W. de Bakker, Victor Guryev, Siavash Sheikhizadeh, Manja Marz, Marcel Martin, Ole Schulz-Trieglaff, Pieter B. Neerincx, Rayan Chikhi, Eric Rivals, John C. Mu, Raoul J. P. Bonnal, Bas E. Dutilh, Paul Medvedev, Louis Dijkstra, Pierre Peterlongo, Ali Ghaffaari, Daniel Valenzuela

Publikováno v: Briefings in Bioinformatics, 19(1), 118-135. Oxford University Press
Briefings in Bioinformatics, 19, 118-135
Briefings in Bioinformatics
Briefings in Bioinformatics, 19(1). Oxford University Press
Briefings in Bioinformatics, 19(1), 118-135
Briefings in Bioinformatics, Oxford University Press (OUP), 2018, 19 (1), pp.118-135. ⟨10.1093/bib/bbw089⟩
Briefings in Bioinformatics, Oxford University Press (OUP), 2018, 19 (1), pp.118-135. 〈10.1093/bib/bbw089〉
Briefings in Bioinformatics, 19, 1, pp. 118-135
Briefings in Bioinformatics, 2018, 19 (1), pp.118-135. ⟨10.1093/bib/bbw089⟩
Briefings in Bioinformatics 19 (2018) 1

Many disciplines, from human genetics and oncology to plant breeding, microbiology and virology, commonly face the challenge of analyzing rapidly increasing numbers of genomes. In case ofHomo sapiens, the number of sequenced genomes will approach hun

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::302b4b6d3da2df08953959b0850432fb
https://www.scopus.com/inward/record.url?partnerID=HzOxMe3b&origin=inward&scp=85041170263

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