Linking the International Wheat Genome Sequencing Consortium bread wheat reference genome sequence to wheat genetic and phenomic data

Autor: Alaux, Michael, Rogers, Jane, Letellier, Thomas, Flores, Raphaël, Alfama, Françoise, Pommier, Cyril, Mohellibi, Nacer, Durand, Sophie, Kimmel, Erik, Michotey, Célia, Guerche, Claire, Loaec, Mikaël, Lainé, Mathilde, Steinbach, Delphine, Choulet, Frédéric, Rimbert, Hélène, Leroy, Philippe, Guilhot, Nicolas, Salse, Jérôme, Feuillet, Catherine, International Wheat Genome Sequencing Consortium, Paux, Etienne, Eversole, Kellye, Adam-Blondon, Anne-Françoise, Quesneville, Hadi

Publikováno v: Genome Biology
Genome Biology, 2018, 19 (1), pp.905-911. ⟨10.1186/s13059-018-1491-4⟩
Genome Biology, Vol 19, Iss 1, Pp 1-10 (2018)
Genome Biology, BioMed Central, 2018, 19 (1), pp.905-911. ⟨10.1186/s13059-018-1491-4⟩
Genome Biology 1 (19), 1-10. (2018)

The Wheat@URGI portal (https://wheat-urgi.versailles.inra.fr) has been developed to provide the international community of researchers and breeders with access to the bread wheat reference genome sequence produced by the International Wheat Genome Se

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ca30cbed4abe4ac4097d2383dae291aa
https://hal.science/hal-02278879/document

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Genome interplay in the grain transcriptome of hexaploid bread wheat

Autor: Pfeifer, Matthias, Kugler, Karl, Sandve, Simen, Zhan, Bujie, Rudi, Heidi, Hvidsten, Torgeir, Mayer, Klaus, Rogers, Jane, Doležel, Jaroslav, Pozniak, Curtis, Eversole, Kellye, Feuillet, Catherine, Gill, Bikram, Friebe, Bernd, Lukaszewski, Adam, Sourdille, Pierre, Endo, Takashi, Kubaláková, Marie, Číhalíková, Jarmila, Dubská, Zdeňka, Vrána, Jan, Šperková, Romana, Šimková, Hana, Febrer, Melanie, Clissold, Leah, Mclay, Kirsten, Singh, Kuldeep, Chhuneja, Parveen, Singh, Nagendra K, Khurana, Jitendra, Akhunov, Eduard, Choulet, Frédéric, Alberti, Adriana, Barbe, Valérie, Wincker, Patrick, Kanamori, Hiroyuki, Kobayashi, Fuminori, Itoh, Takeshi, Matsumoto, Takashi, Sakai, Hiroaki, Tanaka, Tsuyoshi, Wu, Jianzhong, Ogihara, Yasunari, Handa, Hirokazu, Maclachlan, P Ron, Sharpe, Andrew, Klassen, Darrin, Edwards, David, Batley, Jacqueline, Olsen, Odd-Arne, Lien, Sigbjørn, Steuernagel, Burkhard, Wulff, Brande, Caccamo, Mario, Ayling, Sarah, Ramirez-Gonzalez, Ricardo H, Clavijo, Bernardo J, Wright, Jonathan, Spannagl, Manuel, Martis, Mihaela M, Mascher, Martin, Chapman, Jarrod, Poland, Jesse A, Scholz, Uwe, Barry, Kerrie, Waugh, Robbie, Rokhsar, Daniel S, Muehlbauer, Gary J, Stein, Nils, Gundlach, Heidrun, Zytnicki, Matthias, Jamilloux, Véronique, Quesneville, Hadi, Wicker, Thomas, Faccioli, Primetta, Colaiacovo, Moreno, Stanca, Antonio Michele, Budak, Hikmet, Cattivelli, Luigi, Glover, Natasha, Pingault, Lise, Paux, Etienne, Sharma, Sapna, Appels, Rudi, Bellgard, Matthew, Chapman, Brett, Nussbaumer, Thomas, Bader, Kai Christian, Rimbert, Hélène, Wang, Shichen, Knox, Ron, Kilian, Andrzej, Alaux, Michael, Alfama, Françoise, Couderc, Loïc, Guilhot, Nicolas, Viseux, Claire, Loaec, Mikael, Keller, Beat, Praud, Sébastien

Publikováno v: Science
Science, American Association for the Advancement of Science, 2014, 345 (6194), pp.1250091. ⟨10.1126/science.1250091⟩
Science 345:1250091 (2014)
Science, 2014, 345 (6194), pp.287-287. ⟨10.1126/science.1250091⟩
Science (New York, N.Y.), vol 345, iss 6194
Science, American Association for the Advancement of Science, 2014, 345 (6194), pp.287-287. ⟨10.1126/science.1250091⟩

Allohexaploid bread wheat ( Triticum aestivum L.) provides approximately 20% of calories consumed by humans. Lack of genome sequence for the three homeologous and highly similar bread wheat genomes (A, B, and D) has impeded expression analysis of the

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::792490fcbb3a97af561eb356dcd17034
https://doi.org/10.1126/science.1250091

Genome annotation and report system : an integrated system for structural and functional genome annotation (P800)

Autor: Amselem, Joelle, Alaux, Michael, Brault, Baptiste, Lapalu, Nicolas, Legeai, Fabrice, Alfama, Françoise, Brigitte, Leatitia, Choisne, Nathalie, Keliet, Aminath, Kimmel, Erik, Kreplak, Jonathan, Luyten, Isabelle, Pommier, Cyril, Reboux, Sébastien, Bocs, Stéphanie, Steinbach Samson, Delphine, Lebrun, Marc-Henri, Quesneville, Hadi

Publikováno v: Abstracts of Plant and Animal Genomes XIXth Conference, San Diego, CA (USA), January 15-19, 2011

Nowadays with the development of NGS, more and more genomes are sequenced, producing very large amount of data. However, annotations can't keep pace, introducing a lack between genome data and annotation releases. To face this challenge, the URGI (ht

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=od______3631::be53ab5ba74d34c4cbd75a181b0ed6bb
http://agritrop.cirad.fr/559837/

Linking the International Wheat Genome Sequencing Consortium bread wheat reference genome sequence to wheat genetic and phenomic data.

Autor: Alaux M; URGI, INRA, Université Paris-Saclay, 78026, Versailles, France. michael.alaux@inra.fr., Rogers J; International Wheat Genome Sequencing Consortium (IWGSC), 18 High Street, Little Eversden, Cambridge, CB23 1HE, UK., Letellier T; URGI, INRA, Université Paris-Saclay, 78026, Versailles, France., Flores R; URGI, INRA, Université Paris-Saclay, 78026, Versailles, France., Alfama F; URGI, INRA, Université Paris-Saclay, 78026, Versailles, France., Pommier C; URGI, INRA, Université Paris-Saclay, 78026, Versailles, France., Mohellibi N; URGI, INRA, Université Paris-Saclay, 78026, Versailles, France., Durand S; URGI, INRA, Université Paris-Saclay, 78026, Versailles, France., Kimmel E; URGI, INRA, Université Paris-Saclay, 78026, Versailles, France., Michotey C; URGI, INRA, Université Paris-Saclay, 78026, Versailles, France., Guerche C; URGI, INRA, Université Paris-Saclay, 78026, Versailles, France., Loaec M; URGI, INRA, Université Paris-Saclay, 78026, Versailles, France., Lainé M; URGI, INRA, Université Paris-Saclay, 78026, Versailles, France., Steinbach D; URGI, INRA, Université Paris-Saclay, 78026, Versailles, France.; Present address: GQE-Le Moulon UMR 320, INRA, Université Paris-Sud, Université Paris-Saclay, CNRS, AgroParisTech, Ferme du Moulon, 91190, Gif-sur-Yvette, France., Choulet F; GDEC, INRA, Université Clermont Auvergne, 63000, Clermont-Ferrand, France., Rimbert H; GDEC, INRA, Université Clermont Auvergne, 63000, Clermont-Ferrand, France., Leroy P; GDEC, INRA, Université Clermont Auvergne, 63000, Clermont-Ferrand, France., Guilhot N; GDEC, INRA, Université Clermont Auvergne, 63000, Clermont-Ferrand, France., Salse J; GDEC, INRA, Université Clermont Auvergne, 63000, Clermont-Ferrand, France., Feuillet C; GDEC, INRA, Université Clermont Auvergne, 63000, Clermont-Ferrand, France.; Present address: Inari Agriculture, 200 Sydney Street, Cambridge, MA, 02139, USA., Paux E; GDEC, INRA, Université Clermont Auvergne, 63000, Clermont-Ferrand, France., Eversole K; International Wheat Genome Sequencing Consortium (IWGSC), 5207 Wyoming Road, Bethesda, Maryland, 20816, USA., Adam-Blondon AF; URGI, INRA, Université Paris-Saclay, 78026, Versailles, France., Quesneville H; URGI, INRA, Université Paris-Saclay, 78026, Versailles, France.

Publikováno v: Genome biology [Genome Biol] 2018 Aug 17; Vol. 19 (1), pp. 111. Date of Electronic Publication: 2018 Aug 17.