Zobrazeno 1 - 10
of 27
pro vyhledávání: '"Alexey Stupnikov"'
Autor:
Luigi Marchionni, Alexander Favorov, Yulia Medvedeva, Sarah Wheelan, Alexey Sizykh, Bahman Afsari, Anna Budkina, Alexey Stupnikov
Publikováno v:
F1000Research, Vol 10 (2022)
A Molecular Features Set (MFS), is a result of a vast diversity of bioinformatics pipelines. The lack of a “gold standard” for most experimental data modalities makes it difficult to provide valid estimation for a particular MFS's quality. Yet, t
Externí odkaz:
https://doaj.org/article/71cef21f1de543c9ae775eb68e4096fc
Publikováno v:
International Journal of Molecular Sciences, Vol 24, Iss 10, p 8591 (2023)
Differential methylation (DM) is actively recruited in different types of fundamental and translational studies. Currently, microarray- and NGS-based approaches for methylation analysis are the most widely used with multiple statistical models design
Externí odkaz:
https://doaj.org/article/b68e9a5e36d34749aff885cd70951bf4
Autor:
Vitalik Bezuglov, Alexey Stupnikov, Ivan Skakov, Victoria Shtratnikova, J. Richard Pilsner, Alexander Suvorov, Oleg Sergeyev
Publikováno v:
International Journal of Molecular Sciences, Vol 24, Iss 4, p 4195 (2023)
Expression analysis of small noncoding RNA (sRNA), including microRNA, piwi-interacting RNA, small rRNA-derived RNA, and tRNA-derived small RNA, is a novel and quickly developing field. Despite a range of proposed approaches, selecting and adapting a
Externí odkaz:
https://doaj.org/article/a7b3e5c122454799b11251d823545e39
Publikováno v:
International Journal of Molecular Sciences, Vol 24, Iss 2, p 985 (2023)
Multiple sclerosis (MS) is an autoimmune disease of the central nervous system still lacking a cure. Treatment typically focuses on slowing the progression and managing MS symptoms. Single-cell transcriptomics allows the investigation of the immune s
Externí odkaz:
https://doaj.org/article/b0a4f478d6a34ccda34d422ae87d33de
Publikováno v:
BMC Cancer, Vol 19, Iss 1, Pp 1-15 (2019)
Abstract Background Deciphering the meaning of the human DNA is an outstanding goal which would revolutionize medicine and our way for treating diseases. In recent years, non-coding RNAs have attracted much attention and shown to be functional in par
Externí odkaz:
https://doaj.org/article/19d2fd4b1bb24fba953db4cdaf2340e1
Autor:
Alexey Stupnikov, Vitaly Bezuglov, Ivan Skakov, Victoria Shtratnikova, J. Richard Pilsner, Alexander Suvorov, Oleg Sergeyev
Publikováno v:
Non-Coding RNA, Vol 8, Iss 3, p 30 (2022)
Transcriptomics analysis of various small RNA (sRNA) biotypes is a new and rapidly developing field. Annotations for microRNAs, tRNAs, piRNAs and rRNAs contain information on transcript sequences and loci that is vital for downstream analyses. Severa
Externí odkaz:
https://doaj.org/article/ef6ce0129814421392235898d1021de3
Autor:
Vitalik Bezuglov, Alexey Stupnikov, Ivan Skakov, Victoria Shtratnikova, Jonathan Richard Pilsner, Alexander Suvorov, Oleg Sergeyev
Analysis of the expression activity of small noncoding RNA (sRNA), including microRNA, piwi-interacting RNA, small rRNA-derived RNA, and tRNA-derived small RNA, is a novel and quickly developing field. The nature of sRNA calls for bioinformatical app
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::b186568d8b1fe337ad157f752bf3d896
https://doi.org/10.20944/preprints202212.0177.v1
https://doi.org/10.20944/preprints202212.0177.v1
Autor:
Alexey Sizykh, Yulia A. Medvedeva, Sarah J. Wheelan, Bahman Afsari, Alexey Stupnikov, Alexander V. Favorov, Luigi Marchionni
Publikováno v:
F1000Research. 10
A Molecular Features Set (MFS), is a result of vast diversity of bioinformatics pipelines. In case when MFS is used for further analysis to distinguish between phenotypes, it is often referred to as a signature. Lack of the “gold standard” for mo
Autor:
Alexey Stupnikov, Alexey Sizykh, Anna Budkina, Alexander Favorov, Bahman Afsari, Sarah Wheelan, Luigi Marchionni, Yulia Medvedeva
Publikováno v:
F1000Research. 10:1260
A Molecular Features Set (MFS), is a result of a vast diversity of bioinformatics pipelines. The lack of a “gold standard” for most experimental data modalities makes it difficult to provide valid estimation for a particular MFS's quality. Yet, t
Autor:
Kevin M. Prise, Kienan Savage, Caitríona E. McInerney, Manuel Salto-Tellez, Frank Emmert-Streib, Darragh G. McArt, Alexey Stupnikov, Stuart McIntosh, Richard D Kennedy
Publikováno v:
Stupnikov, A, McInerney, C E, Savage, K I, McIntosh, S A, Emmert-Streib, F, Kennedy, R, Salto-Tellez, M, Prise, K M & McArt, D G 2021, ' Robustness of differential gene expression analysis of RNA-seq ', Computational and Structural Biotechnology Journal, vol. 19, pp. 3470-3481 . https://doi.org/10.1016/j.csbj.2021.05.040
Computational and Structural Biotechnology Journal
Computational and Structural Biotechnology Journal, Vol 19, Iss, Pp 3470-3481 (2021)
Computational and Structural Biotechnology Journal
Computational and Structural Biotechnology Journal, Vol 19, Iss, Pp 3470-3481 (2021)
Graphical abstract
RNA-sequencing (RNA-seq) is a relatively new technology that lacks standardisation. RNA-seq can be used for Differential Gene Expression (DGE) analysis, however, no consensus exists as to which methodology ensures robust and r
RNA-sequencing (RNA-seq) is a relatively new technology that lacks standardisation. RNA-seq can be used for Differential Gene Expression (DGE) analysis, however, no consensus exists as to which methodology ensures robust and r
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::3fa0eb57b0d81cfada53bb28bee42d5f
https://pure.qub.ac.uk/en/publications/e1e789db-0e5a-4081-ba4e-64282dfe53d0
https://pure.qub.ac.uk/en/publications/e1e789db-0e5a-4081-ba4e-64282dfe53d0