Zobrazeno 1 - 10
of 42
pro vyhledávání: '"Alexey E. Kazakov"'
Autor:
Megan E. Garber, Vered Frank, Alexey E. Kazakov, Matthew R. Incha, Alberto A. Nava, Hanqiao Zhang, Luis E. Valencia, Jay D. Keasling, Lara Rajeev, Aindrila Mukhopadhyay
Publikováno v:
mBio, Vol 14, Iss 6 (2023)
ABSTRACTThis report presents multi-genome evidence that REC protein family expansion occurs when the emergence of new pathways gives rise to functional discordance. Specificity between residues in REC domain containing response regulators with paired
Externí odkaz:
https://doaj.org/article/1b5e31e2aab640b78a76252a4e5a2252
Autor:
Xiaoqin Wu, Alexey E. Kazakov, Sara Gushgari-Doyle, Xingli Yu, Valentine Trotter, Rhona Kayra Stuart, Romy Chakraborty
Publikováno v:
Microbiology Spectrum, Vol 9, Iss 3 (2021)
ABSTRACT Violacein has different bioactive properties conferring distinct selective advantages, such as defense from predation and interspecific competition. Adaptation of Janthinobacterium to diverse habitats likely leads to variation in violacein p
Externí odkaz:
https://doaj.org/article/34763ef1f34f496187764f98c3fdb1e7
Autor:
Jennifer V. Kuehl, Morgan N. Price, Jayashree Ray, Kelly M. Wetmore, Zuelma Esquivel, Alexey E. Kazakov, Michelle Nguyen, Raquel Kuehn, Ronald W. Davis, Terry C. Hazen, Adam P. Arkin, Adam Deutschbauer
Publikováno v:
mBio, Vol 5, Iss 3 (2014)
ABSTRACT The genomes of sulfate-reducing bacteria remain poorly characterized, largely due to a paucity of experimental data and genetic tools. To meet this challenge, we generated an archived library of 15,477 mapped transposon insertion mutants in
Externí odkaz:
https://doaj.org/article/26a3f97aff804914a572f514337b17db
Publikováno v:
International Journal of Hydrogen Energy. 46:13632-13637
The effect of the electrostatic field on hydrogen absorption is experimentally studied for the case of AB5-type intermetallic compound LaNi4.4Al0.3Fe0.3 with low equilibrium pressure. Experimental facility contained control and measurement system for
Autor:
Hans K. Carlson, Torben Nielsen, Jennifer V. Kuehl, Adam P. Arkin, Morgan N. Price, Alex V. Carr, Alexey E. Kazakov, Trenton K. Owens, Lauren M. Lui, Adam M. Deutschbauer
Publikováno v:
The ISME Journal
The ISME journal, vol 14, iss 8
The ISME journal, vol 14, iss 8
Respiratory and catabolic genes are differentially distributed across microbial genomes. Thus, specific carbon sources may favor different respiratory processes. We profiled the influence of 94 carbon sources on the end products of nitrate respiratio
Autor:
Benjamin A. Adler, Alexey E. Kazakov, Crystal Zhong, Hualan Liu, Elizabeth Kutter, Lauren M. Lui, Torben N. Nielsen, Heloise Carion, Adam M. Deutschbauer, Vivek K. Mutalik, Adam P. Arkin
Publikováno v:
Microbiology (Reading, England), vol 167, iss 12
Microbiology
Microbiology
Though bacteriophages (phages) are known to play a crucial role in bacterial fitness and virulence, our knowledge about the genetic basis of their interaction, cross-resistance and host-range is sparse. Here, we employed genome-wide screens in Salmon
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::440dfd78b0569af6fb0259b778eba5b2
https://escholarship.org/uc/item/6z4571b3
https://escholarship.org/uc/item/6z4571b3
Autor:
Sean Carim, Alexey E. Kazakov, Vivek K. Mutalik, Morgan N. Price, Adam P. Arkin, Ashley L. Azadeh, Romy Chakraborty, Peter J. Walian, Torben Nielsen, Lauren M. Lui, Adam M. Deutschbauer
Publikováno v:
The ISME journal, vol 15, iss 8
The ISME Journal
The ISME Journal
Tailocins are bactericidal protein complexes produced by a wide variety of bacteria to compete against closely related strains. Like tailed bacteriophages, with whom they share an evolutionary and morphological relationship, tailocins bind and kill a
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::d23c1674ef0c326b047be54fd4607bcc
https://escholarship.org/uc/item/9wd3p4sh
https://escholarship.org/uc/item/9wd3p4sh
Autor:
Megan E. Garber, Vered Frank, Alexey E. Kazakov, Matthew R. Incha, Alberto A. Nava, Hanqiao Zhang, Jay D. Keasling, Lara Rajeev, Aindrila Mukhopadhyay
This report presents multi-genomes and experimental evidence that REC protein family expansion occurs when the emergence of new pathways give rise to functional discordance. Specificity between REC-domain containing response regulators with paired hi
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::f5b9bc7f23262eac0e136a395e57777a
https://doi.org/10.1101/2020.09.30.321588
https://doi.org/10.1101/2020.09.30.321588
Autor:
Alexey E. Kazakov, Vivek K. Mutalik, Adam P. Arkin, Lauren M. Lui, Benjamin A. Adler, Adam M. Deutschbauer, Hualan Liu, Heloise Carion, Torben Nielsen, Elizabeth Kutter, Crystal Zhong
Author(s): Adler, Benjamin; Kazakov, Alexey; Zhong, Crystal; Liu, Hualan; Kutter, Elizabeth; Lui, Lauren; Nielsen, Torben; Carion, Heloise; Deutschbauer, Adam; Mutalik, Vivek; Arkin, Adam | Abstract: Summary Though bacteriophages (phages) are known t
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::8b4590ae7b0271211679f4b662ae2778
https://doi.org/10.1101/2020.04.27.058388
https://doi.org/10.1101/2020.04.27.058388
Autor:
Aindrila Mukhopadhyay, Pavel S. Novichkov, Jessica Trinh, Lara Rajeev, Joyce Luk, Mitchell G. Thompson, Alexey E. Kazakov, Megan E. Garber, Duy Masuno, Nurgul Kaplan
Publikováno v:
Molecular Microbiology. 107:704-717
Bacterial response to metals can require complex regulation. We report an overlapping regulation for copper and zinc resistance genes in the denitrifying bacterium, Pseudomonas stutzeri RCH2, by three two-component regulatory proteins CopR1, CopR2 an