Comparative phylogeographic inference with genome‐wide data from aggregated population pairs

Autor: Alexander T. Xue, Michael J. Hickerson

Publikováno v: Evolution. 74:808-830

Comparing divergences across multiple sister population pairs has been a focus in phylogeography since its inception. Initial approaches used organelle genetic data and involved qualitative comparisons of phylogenetic patterns to evaluate hypotheses

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::8deb0d8856a3b4e59846bf003c25d079
https://doi.org/10.1111/evo.13945

Long‐term in situ persistence of biodiversity in tropical sky islands revealed by landscape genomics

Autor: Alexander T. Xue, Alicia Mastretta-Yanes, Alejandra Moreno-Letelier, Brent C. Emerson, Nadir Alvarez, Tove H. Jorgensen, Daniel Piñero

Publikováno v: Digital.CSIC. Repositorio Institucional del CSIC
instname
Mastretta-Yanes, A, Xue, A T, Moreno-Letelier, A, Jorgensen, T H, Alvarez, N, Pinero, D & Emerson, B C 2018, ' Long-term insitu persistence of biodiversity in tropical sky islands revealed by landscape genomics ', Molecular Ecology, vol. 27, no. 2, pp. 432-448 . https://doi.org/10.1111/mec.14461

Tropical mountains are areas of high species richness and endemism. Two historical phenomena may have contributed to this: (i) fragmentation and isolation of habitats may have promoted the genetic differentiation of populations and increased the poss

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::bb8aab7c693bd1421787cc94fe1cc7d6
https://doi.org/10.1111/mec.14461

Discovery of ongoing selective sweeps within Anopheles mosquito populations using deep learning

Autor: Andrew D. Kern, Alexander T. Xue, Daniel R. Schrider

Identification of partial sweeps, which include both hard and soft sweeps that have not currently reached fixation, provides crucial information about ongoing evolutionary responses. To this end, we introduce a deep learning approach that uses a conv

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::819464abe8c0ccd7c5bec00091ea6f2e

Asymmetrical gene flow in five co-distributed syngnathids explained by ocean currents and rafting propensity

Autor: Laura D. Bertola, J. T. Boehm, Carole C. Baldwin, Michael J. Hickerson, Isaac Overcast, Alexander T. Xue, John D. Robinson, Stephen E. Harris, Nathan F. Putman

Publikováno v: Proc Biol Sci

Ocean circulation driving macro-algal rafting is believed to serve as an important mode of dispersal for many marine organisms, leading to predictions on population-level genetic connectivity and the directionality of effective dispersal. Here, we us

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::8396587129546971a6306d188e938b4f
https://doi.org/10.1098/rspb.2020.0657

Inferring responses to climate dynamics from historical demography in neotropical forest lizards

Autor: Jason L. Brown, Ana Carolina Carnaval, Alexander T. Xue, Ivan Prates, Miguel Trefaut Rodrigues, Diego F. Alvarado-Serrano, Michael J. Hickerson

Publikováno v: Repositório Institucional da USP (Biblioteca Digital da Produção Intelectual)
Universidade de São Paulo (USP)
instacron:USP

We apply a comparative framework to test for concerted demographic changes in response to climate shifts in the neotropical lowland forests, learning from the past to inform projections of the future. Using reduced genomic (SNP) data from three lizar

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6a5b2586fbf60618dcd1ec1bdc227a78