Zobrazeno 1 - 10
of 16
pro vyhledávání: '"Alexander Shlemov"'
Autor:
Hosein Mohimani, Alexey Gurevich, Alexander Shlemov, Alla Mikheenko, Anton Korobeynikov, Liu Cao, Egor Shcherbin, Louis-Felix Nothias, Pieter C. Dorrestein, Pavel A. Pevzner
Publikováno v:
Nature Communications, Vol 9, Iss 1, Pp 1-12 (2018)
New natural products can be identified via mass spectrometry by excluding all known ones from the analysis, a process called dereplication. Here, the authors extend a previously published dereplication algorithm to different classes of secondary meta
Externí odkaz:
https://doaj.org/article/c4d864910a6d4ce48c29b27e6d117690
Autor:
Alexander V. Spirov, David M. Holloway, Stefan Baumgartner, Alexander Shlemov, Theodore Alexandrov, Nina Golyandina
Publikováno v:
PLoS ONE, Vol 16, Iss 8, p e0244701 (2021)
PLoS ONE
PLoS ONE
The Bicoid (Bcd) protein is a primary determinant of early anterior-posterior (AP) axis specification in Drosophila embryogenesis. This morphogen is spatially distributed in an anterior-high gradient, and affects particular AP cell fates in a concent
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::72401daceddf5b13624b3621d836ac9c
https://doi.org/10.1101/2020.12.16.423027
https://doi.org/10.1101/2020.12.16.423027
Autor:
Liu Cao, Alexey Gurevich, Egor Shcherbin, Pavel A. Pevzner, Alla Mikheenko, Hosein Mohimani, Alexander Shlemov, Louis-Félix Nothias, Anton Korobeynikov, Pieter C. Dorrestein
Publikováno v:
Nature Communications, Vol 9, Iss 1, Pp 1-12 (2018)
Nature Communications
Nature Communications
Natural products have traditionally been rich sources for drug discovery. In order to clear the road toward the discovery of unknown natural products, biologists need dereplication strategies that identify known ones. Here we report DEREPLICATOR+, an
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ff2a9d0fdb03c7d7edaced3012fef12e
https://doaj.org/article/c4d864910a6d4ce48c29b27e6d117690
https://doaj.org/article/c4d864910a6d4ce48c29b27e6d117690
Autor:
Alexey Gurevich, Lena Gerwick, Anton Korobeynikov, Alla Mikheenko, Md-Nafiz Hamid, Jon G. Sanders, Rodolfo Salido Benitez, Alexander Shlemov, Nitin Kumar Singh, Liu Cao, Evgenia Glukhov, Tiago Leao, William H. Gerwick, C. Benjamin Naman, Rob Knight, Kelsey L. Alexander, Luke R. Thompson, Tal Luzzatto-Knaan, Amina Bouslimani, Iddo Friedberg, Robby Quinn, Fernando Vargas, Hosein Mohimani, James T. Morton, Pavel A. Pevzner, Pieter C. Dorrestein, Kasthuri Venkateswaran, Louis-Félix Nothias
Publikováno v:
Cell systems, vol 9, iss 6
Cell Syst
Cell Syst
Ribosomally synthesized and post-translationally modified peptides (RiPPs) are an important class of natural products that contain antibiotics and a variety of other bioactive compounds. The existing methods for discovery of RiPPs by combining genome
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::b5a6bc9819ddfb469b15766b1dc9ccd2
https://escholarship.org/uc/item/9xq9j799
https://escholarship.org/uc/item/9xq9j799
Autor:
Anton Korobeynikov, Alexander Shlemov, Hosein Mohimani, Alla Mikheenko, Pavel A. Pevzner, Alexey Gurevich
Publikováno v:
Nature Microbiology. 3:319-327
Peptidic natural products (PNPs) include many antibiotics and other bioactive compounds. While the recent launch of the Global Natural Products Social (GNPS) molecular networking infrastructure is transforming PNP discovery into a high-throughput tec
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::7e3c23275dfb951c01986ab74266d836
https://doi.org/10.1038/s41564-017-0094-2
https://doi.org/10.1038/s41564-017-0094-2
Autor:
Sergey Bankevich, Pavel A. Pevzner, Yana Safonova, Andrey Bzikadze, Maria A. Turchaninova, Alexander Shlemov
Publikováno v:
The Journal of Immunology. 199:3369-3380
Transforming error-prone immunosequencing datasets into Ab repertoires is a fundamental problem in immunogenomics, and a prerequisite for studies of immune responses. Although various repertoire reconstruction algorithms were released in the last 3 y
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::033117899d5f2673c1953e9022c95df6
https://doi.org/10.4049/jimmunol.1700485
https://doi.org/10.4049/jimmunol.1700485
Autor:
Olga Kunyavskaya, Robert D. Finn, Martin Beracochea, Michael R. Crusoe, Alexander Shlemov, Simon C. Potter, Anton Korobeynikov, Alexandre Almeida, Alla Lapidus, Maxim Scheremetjew, Lorna Richardson, Miguel Boland, Varsha Kale, Ekaterina A. Sakharova, Alex L. Mitchell, Josephine Burgin, Guy Cochrane
Publikováno v:
Nucleic Acids Research
MGnify (http://www.ebi.ac.uk/metagenomics) provides a free to use platform for the assembly, analysis and archiving of microbiome data derived from sequencing microbial populations that are present in particular environments. Over the past 2 years, M
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::afb5131390a796caa1a7679975aa10d5
https://doi.org/10.1093/nar/gkz1035
https://doi.org/10.1093/nar/gkz1035
Autor:
Alexander Shlemov, Anton Korobeynikov
Recently large databases containing profile Hidden Markov Models (pHMMs) emerged. These pHMMs may represent the sequences of antibiotic resistance genes, or allelic variations amongst highly conserved housekeeping genes used for strain typing, etc. T
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::830fd852961af0eba08df78223c4456b
Autor:
Alexey Gurevich, Lena Gerwick, Fernando Vargas, Anton Korobeynikov, Tal Luzzatto-Knaan, Jon G. Sanders, Pieter C. Dorrestein, Evgenia Glukhov, Iddo Friedberg, Alla Mikheenko, Nathan A. Moss, C. B. Naman, Alexander Shlemov, Nitin Kumar Singh, Pavel A. Pevzner, William H. Gerwick, Rob Knight, Tiago Leao, Kelsey L. Alexander, Md-Nafiz Hamid, Luke R. Thompson, Hosein Mohimani, Benitez Ras, Louis-Félix Nothias, Jamie Morton, Kasturi Venkateswaran
Ribosomally synthesized and post-translationally modified peptides (RiPPs) are an important class of natural products that include many antibiotics and a variety of other bioactive compounds. While recent breakthroughs in RiPP discovery raised the ch
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::baec91e9959bf0271598adbb57148793
https://doi.org/10.1101/227504
https://doi.org/10.1101/227504
Autor:
Alexander V. Spirov, Theodore Alexandrov, Nina Golyandina, David M. Holloway, Alexander Shlemov
Motivation: Spatial pattern formation of the primary anterior-posterior morphogenetic gradient of the transcription factor Bicoid (Bcd) has been studied experimentally and computationally for many years. Bcd specifies positional information for the d
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::5a7d47361de8cde6bdaedf11f6be1ede
http://arxiv.org/abs/1704.00351
http://arxiv.org/abs/1704.00351