Transcriptome and Metabolite Changes during Hydrogen Cyanamide-Induced Floral Bud Break in Sweet Cherry

Autor: Irina A. Ionescu, Gregorio López-Ortega, Meike Burow, Almudena Bayo-Canha, Alexander Junge, Oliver Gericke, Birger L. Møller, Raquel Sánchez-Pérez

Publikováno v: Frontiers in Plant Science, Vol 8 (2017)

Release of bud dormancy in perennial woody plants is a temperature-dependent process and thus flowering in these species is heavily affected by climate change. The lack of cold winters in temperate growing regions often results in reduced flowering a

Externí odkaz: https://doaj.org/article/93f82232ecdd4d7a9ba05f24d8cf8cca

STRING v11: protein-protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets

Autor: Christian von Mering, Annika L. Gable, Milan Simonovic, Jaime Huerta-Cepas, Nadezhda Tsankova Doncheva, Damian Szklarczyk, John H. Morris, Alexander Junge, Peer Bork, Stefan Wyder, David Lyon, Lars Juhl Jensen

Publikováno v: Nucleic acids research, vol 47, iss D1
Szklarczyk, D, Gable, A L, Lyon, D, Junge, A, Wyder, S, Huerta-Cepas, J, Simonovic, M, Doncheva, N T, Morris, J H, Bork, P, Jensen, L J & von Mering, C 2019, ' STRING v11 : protein-protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets ', Nucleic Acids Research, vol. 47, no. D1, pp. D607-D613 . https://doi.org/10.1093/nar/gky1131
Nucleic Acids Research

Proteins and their functional interactions form the backbone of the cellular machinery. Their connectivity network needs to be considered for the full understanding of biological phenomena, but the available information on protein–protein associati

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::dba34998d22615bffd4c0c31a2aa2a93
https://escholarship.org/uc/item/23v83568

The 'Football is Medicine' platform-scientific evidence, large-scale implementation of evidence-based concepts and future perspectives

Autor: Per Aagaard, Zoran Milanović, Amy E. Mendham, Ioannis G. Fatouros, Mikael Rørth, Jacob Uth, Magni Mohr, Knud Ryom, Jens Bangsbo, Anne-Marie Elbe, Carlo Castagna, Tim Meyer, Susana Póvoas, Pasqualina Buono, Klaus Brasso, Abdossaleh Zar, Therese Hornstrup, P Hansen, Jesper L. Andersen, Svein Arne Pettersen, Peter Reddy, Søren Bennike, Jørn Wulff Helge, M. C. de Sousa, André Seabra, António Rebelo, Andreas Holtermann, Eva Wulff Helge, Daniel Parnell, Svein Barene, Thomas Rostgaard Andersen, J. C. Xu, Harry T. Hubball, Felipe Lobelo, Craig A. Williams, Pedro Figueiredo, Laila Ottesen, Birgitte R. Krustrup, Donald T. Kirkendall, Alexander Junge, Peter Krustrup, Malte Nejst Larsen, João Brito, J. F. Schmidt, J. Dvorak, Amir Hammami, Morten B. Randers, George P. Nassis, Jens Jung Nielsen, Jose A. L. Calbet, Lars Nybo

Publikováno v: Repositório Científico de Acesso Aberto de Portugal
Repositório Científico de Acesso Aberto de Portugal (RCAAP)
instacron:RCAAP
Krustrup, P, Williams, C A, Mohr, M, Hansen, P R, Helge, E W, Elbe, A-M, de Sousa, M, Dvorak, J, Junge, A, Hammami, A, Holtermann, A, Larsen, M N, Kirkendall, D, Schmidt, J F, Andersen, T R, Buono, P, Rørth, M, Parnell, D, Ottesen, L, Bennike, S, Nielsen, J J, Mendham, A E, Zar, A, Uth, J, Hornstrup, T, Brasso, K, Nybo, L, Krustrup, B R, Meyer, T, Aagaard, P, Andersen, J L, Hubball, H, Reddy, P A, Ryom, K, Lobelo, F, Barene, S, Helge, J W, Fatouros, I G, Nassis, G P, Xu, J C, Pettersen, S A, Calbet, J A, Seabra, A, Rebelo, A N, Figueiredo, P, Póvoas, S, Castagna, C, Milanovic, Z, Bangsbo, J, Randers, M B & Brito, J 2018, ' The "Football is Medicine" platform-scientific evidence, large-scale implementation of evidence-based concepts and future perspectives ', Scandinavian Journal of Medicine & Science in Sports, vol. 28, no. 51, pp. 3-7 . https://doi.org/10.1111/sms.13220
Krustrup, P, Williams, C A, Mohr, M, Hansen, P R, Helge, E W, Elbe, A M, de Sousa, M, Dvorak, J, Junge, A, Hammami, A, Holtermann, A, Larsen, M N, Kirkendall, D, Schmidt, J F, Andersen, T R, Buono, P, Rørth, M, Parnell, D, Ottesen, L, Bennike, S, Nielsen, J J, Mendham, A E, Zar, A, Uth, J, Hornstrup, T, Brasso, K, Nybo, L, Krustrup, B R, Meyer, T, Aagaard, P, Andersen, J L, Hubball, H, Reddy, P A, Ryom, K, Lobelo, F, Barene, S, Helge, J W, Fatouros, I G, Nassis, G P, Xu, J C, Pettersen, S A, Calbet, J A, Seabra, A, Rebelo, A N, Figueiredo, P, Póvoas, S, Castagna, C, Milanovic, Z, Bangsbo, J, Randers, M B & Brito, J 2018, ' The “Football is Medicine” platform—scientific evidence, large-scale implementation of evidence-based concepts and future perspectives ', Scandinavian Journal of Medicine and Science in Sports, vol. 28, pp. 3-7 . https://doi.org/10.1111/sms.13220
Krustrup, P, Williams, C A, Mohr, M, Hansen, P R, Helge, E W, Elbe, A-M, de Sousa, M, Dvorak, J, Junge, A, Hammami, A, Holtermann, A, Larsen, M N, Kirkendall, D, Schmidt, J F, Andersen, T R, Buono, P, Rørth, M, Parnell, D, Ottesen, L, Bennike, S, Nielsen, J J, Mendham, A E, Zar, A, Uth, J, Hornstrup, T, Brasso, K, Nybo, L, Krustrup, B R, Meyer, T, Aagaard, P, Andersen, J L, Hubball, H, Reddy, P A, Ryom, K, Lobelo, F, Barene, S, Helge, J W, Fatouros, I G, Nassis, G P, Xu, J C, Pettersen, S A, Calbet, J A, Seabra, A, Rebelo, A N, Figueiredo, P, Póvoas, S, Castagna, C, Milanovic, Z, Bangsbo, J, Randers, M B & Brito, J 2018, ' The "Football is Medicine" platform-scientific evidence, large-scale implementation of evidence-based concepts and future perspectives ', Scandinavian Journal of Medicine & Science in Sports, vol. 28, no. Suppl. 1, pp. 3-7 . https://doi.org/10.1111/sms.13220

Submitted by Rosa Duarte (rduarte@maieutica.pt) on 2021-04-29T14:10:46Z No. of bitstreams: 1 Krustrup et al 2018.pdf: 450412 bytes, checksum: e38b811aae92001b4e8e0b8431af5038 (MD5) Made available in DSpace on 2021-04-29T14:10:46Z (GMT). No. of bitstr

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::286fc646a29bb4dbd08515c467c58535

Bioconda: A sustainable and comprehensive software distribution for the life sciences

Autor: Björn Grüning, Ryan Dale, Andreas Sjödin, Brad A. Chapman, Jillian Rowe, Christopher H. Tomkins-Tinch, Renan Valieris, Adam Caprez, Bérénice Batut, Mathias Haudgaard, Thomas Cokelaer, Kyle A. Beauchamp, Brent S Pedersen, Youri Hoogstrate, Anthony Bretaudeau, Devon Ryan, Gildas Le Corguillé, Dilmurat Yusuf, Sebastian Luna-Valero, Rory Kirchner, Karel Brinda, Thomas Wollmann, Martin Raden, Simon J. van Heeringen, Nicola Soranzo, Lorena Pantano, Zachary Charlop-Powers, Per Unneberg, Matthias De Smet, Marcel Martin, Greg Von Kuster, Tiago Antao, Milad Miladi, Kevin Thornton, Christian Brueffer, Marius van den Beek, Daniel Maticzka, Clemens Blank, Sebastian Will, K´evin Gravouil, Joachim Wolff, Manuel Holtgrewe, Jörg Fallmann, Vitor C. Piro, Ilya Shlyakhter, Ayman Yousif, Philip Mabon, Xiao-Ou Zhang, Wei Shen, Jennifer Cabral, Cristel Thomas, Eric Enns, Joseph Brown, Jorrit Boekel, Mattias de Hollander, Jerome Kelleher, Nitesh Turaga, Julian R. de Ruiter, Dave Bouvier, Simon Gladman, Saket Choudhary, Nicholas Harding, Florian Eggenhofer, Arne Kratz, Zhuoqing Fang, Robert Kleinkauf, Henning Timm, Peter J. A. Cock, Enrico Seiler, Colin Brislawn, Hai Nguyen, Endre Bakken Stovner, Philip Ewels, Matt Chambers, James E. Johnson, Emil Hägglund, Simon Ye, Roman Valls Guimera, Elmar Pruesse, W. Augustine Dunn, Lance Parsons, Rob Patro, David Koppstein, Elena Grassi, Inken Wohlers, Alex Reynolds, MacIntosh Cornwell, Nicholas Stoler, Daniel Blankenberg, Guowei He, Marcel Bargull, Alexander Junge, Rick Farouni, Mallory Freeberg, Sourav Singh, Daniel R. Bogema, Fabio Cumbo, Liang-Bo Wang, David E Larson, Matthew L. Workentine, Upendra Kumar Devisetty, Sacha Laurent, Pierrick Roger, Xavier Garnier, Rasmus Agren, Aziz Khan, John M Eppley, Wei Li, Bianca Katharina Stöcker, Tobias Rausch, James Taylor, Patrick R. Wright, Adam P. Taranto, Davide Chicco, Bengt Sennblad, Jasmijn A. Baaijens, Matthew Gopez, Nezar Abdennur, Iain Milne, Jens Preussner, Luca Pinello, Avi Srivastava, Aroon T. Chande, Philip Reiner Kensche, Yuri Pirola, Michael Knudsen, Ino de Bruijn, Kai Blin, Giorgio Gonnella, Oana M. Enache, Vivek Rai, Nicholas R. Waters, Saskia Hiltemann, Matthew L. Bendall, Christoph Stahl, Alistair Miles, Yannick Boursin, Yasset Perez-Riverol, Sebastian Schmeier, Erik Clarke, Kevin Arvai, Matthieu Jung, Tom´as Di Domenico, Julien Seiler, Eric Rasche, Etienne Kornobis, Daniela Beisser, Sven Rahmann, Alexander S Mikheyev, Camy Tran, Jordi Capellades, Christopher Schröder, Adrian Emanuel Salatino, Simon Dirmeier, Timothy H. Webster, Oleksandr Moskalenko, Gordon Stephen, Johannes Köster

We present Bioconda (https://bioconda.github.io), a distribution of bioinformatics software for the lightweight, multiplatform and language-agnostic package manager Conda. Currently, Bioconda offers a collection of over 3000 software packages, which

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::8624a7351a9f3f1f0c0e57beb5ff9386
https://doi.org/10.1101/207092

RNAscClust:Clustering RNA sequences using structure conservation and graph based motifs

Autor: Jan Gorodkin, Milad Miladi, Fabrizio Costa, Rolf Backofen, Stefan E. Seemann, Alexander Junge, Jakob Hull Havgaard

Publikováno v: Miladi, M, Junge, A, Costa, F, Seemann, S E, Havgaard, J H, Gorodkin, J & Backofen, R 2017, ' RNAscClust : Clustering RNA sequences using structure conservation and graph based motifs ', Bioinformatics, vol. 33, no. 14, pp. 2089-2096 . https://doi.org/10.1093/bioinformatics/btx114
Bioinformatics

Motivation Clustering RNA sequences with common secondary structure is an essential step towards studying RNA function. Whereas structural RNA alignment strategies typically identify common structure for orthologous structured RNAs, clustering seeks

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::7aabf6190cb12558e8c34e2ea29eb5a0
https://curis.ku.dk/portal/da/publications/rnascclust(ab6c1b88-e229-4502-ab70-d55d0400b727).html