Zobrazeno 1 - 10
of 25
pro vyhledávání: '"Alexa B. R. McIntyre"'
Autor:
Alexander M. Price, Katharina E. Hayer, Alexa B. R. McIntyre, Nandan S. Gokhale, Jonathan S. Abebe, Ashley N. Della Fera, Christopher E. Mason, Stacy M. Horner, Angus C. Wilson, Daniel P. Depledge, Matthew D. Weitzman
Publikováno v:
Nature Communications, Vol 11, Iss 1, Pp 1-17 (2020)
Adenovirus transcripts contain N6-methyladenosine (m6A) modification. Here the authors profile m6A modification sites on adenovirus mRNAs using Illumina meRIP-Seq and nanopore direct RNA sequencing, and showcase a role for m6A in splicing of viral la
Externí odkaz:
https://doaj.org/article/3a519d8fdd744f07aceaf2a7bd692439
Autor:
Alexa B. R. McIntyre, Noah Alexander, Kirill Grigorev, Daniela Bezdan, Heike Sichtig, Charles Y. Chiu, Christopher E. Mason
Publikováno v:
Nature Communications, Vol 10, Iss 1, Pp 1-11 (2019)
N6-methyladenine is involved in many biological pathways for microbial survival and host interaction. Here the authors train a neural network for improved m6A detection in nanopore sequencing data and validate methylomes for a microbial reference com
Externí odkaz:
https://doaj.org/article/1230778b6f7c4c39bf87c3285ae9672e
Autor:
Alexa B. R. McIntyre, Rachid Ounit, Ebrahim Afshinnekoo, Robert J. Prill, Elizabeth Hénaff, Noah Alexander, Samuel S. Minot, David Danko, Jonathan Foox, Sofia Ahsanuddin, Scott Tighe, Nur A. Hasan, Poorani Subramanian, Kelly Moffat, Shawn Levy, Stefano Lonardi, Nick Greenfield, Rita R. Colwell, Gail L. Rosen, Christopher E. Mason
Publikováno v:
Genome Biology, Vol 18, Iss 1, Pp 1-19 (2017)
Abstract Background One of the main challenges in metagenomics is the identification of microorganisms in clinical and environmental samples. While an extensive and heterogeneous set of computational tools is available to classify microorganisms usin
Externí odkaz:
https://doaj.org/article/9b47ccb0d6d24c0e82e3f2c137fa069c
Autor:
Alexa B. R. McIntyre, Rachid Ounit, Ebrahim Afshinnekoo, Robert J. Prill, Elizabeth Hénaff, Noah Alexander, Samuel S. Minot, David Danko, Jonathan Foox, Sofia Ahsanuddin, Scott Tighe, Nur A. Hasan, Poorani Subramanian, Kelly Moffat, Shawn Levy, Stefano Lonardi, Nick Greenfield, Rita R. Colwell, Gail L. Rosen, Christopher E. Mason
Publikováno v:
Genome Biology, Vol 20, Iss 1, Pp 1-1 (2019)
Following publication of the original article [1], the authors would like to highlight the following two corrections.
Externí odkaz:
https://doaj.org/article/4943067364b748fc9b4dd5df4aa04f31
Autor:
Jonathan S. Abebe, Alexa B. R. McIntyre, Matthew D. Weitzman, Alexander M. Price, Nandan S. Gokhale, Christopher E. Mason, Daniel P. Depledge, Ashley N. Della Fera, Katharina E. Hayer, Stacy M. Horner, Angus C. Wilson
Publikováno v:
Nature Communications, Vol 11, Iss 1, Pp 1-17 (2020)
Adenovirus is a nuclear replicating DNA virus reliant on host RNA processing machinery. Processing and metabolism of cellular RNAs can be regulated by METTL3, which catalyzes the addition of N6-methyladenosine (m6A) to mRNAs. While m6A-modified adeno
Autor:
Alexa B. R. McIntyre, Tristan A. Caro, Matthew Wendeln, Patrick M. Nicoll, Matthew Freeland, David J. Smith, Samantha M. Waters, Noelle C. Bryan, Sasha Madronich
Publikováno v:
Aerobiologia. 35:771-776
Viable microorganisms collected from the Earth’s upper atmosphere are mysterious considering the intensely biocidal ultraviolet (UV) light conditions dominating rarefied air. Historically, most investigations examining the relationship between bioa
Autor:
Blerta Xhemalce, Michael J. McFadden, Nathan S. Abell, Haralambos Mourelatos, Stacy M. Horner, Christopher E. Mason, Alexa B. R. McIntyre, Nandan S. Gokhale, Hélène Ipas
Publikováno v:
Cell reports
SUMMARY Type I interferons (IFNs) induce hundreds of IFN-stimulated genes (ISGs) in response to viral infection. Induction of these ISGs must be regulated for an efficient and controlled antiviral response, but post-transcriptional of these genes hav
Autor:
Alexa B. R. McIntyre, Leandro Cerchietti, Stacy M. Horner, Nandan S. Gokhale, Samie R. Jaffrey, Christopher E. Mason
Publikováno v:
Scientific Reports
Scientific Reports, Vol 10, Iss 1, Pp 1-15 (2020)
Scientific Reports, Vol 10, Iss 1, Pp 1-15 (2020)
Many cellular mRNAs contain the modified base m6A, and recent studies have suggested that various stimuli can lead to changes in m6A. The most common method to map m6A and to predict changes in m6A between conditions is methylated RNA immunoprecipita
Publikováno v:
PLoS Genetics
PLoS Genetics, Vol 16, Iss 2, p e1008285 (2020)
PLoS Genetics, Vol 16, Iss 2, p e1008285 (2020)
MicroRNAs (miRNAs) control the abundance of the majority of the vertebrate transcriptome. The recognition sequences, or target sites, for bilaterian miRNAs are found predominantly in the 3′ untranslated regions (3′UTRs) of mRNAs, and are amongst
Autor:
Matthew D. Weitzman, Alexa B. R. McIntyre, Angus C. Wilson, Katharina E. Hayer, Ashley N. Della Fera, Alexander M. Price, Nandan S. Gokhale, Stacy M. Horner, Christopher E. Mason, Daniel P. Depledge
Adenovirus is a nuclear replicating DNA virus reliant on host RNA processing machinery. Processing and metabolism of cellular RNAs can be regulated by METTL3, which catalyzes the addition of N6-methyladenosine (m6A) to mRNAs. While m6A-modified adeno
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f7929b56f303937308cfd5f5b15d6875
https://doi.org/10.1101/865485
https://doi.org/10.1101/865485