Implementation of California COVIDNet – a multi-sector collaboration for statewide SARS-CoV-2 genomic surveillance

Autor: Debra A. Wadford, Nikki Baumrind, Elizabeth F. Baylis, John M. Bell, Ellen L. Bouchard, Megan Crumpler, Eric M. Foote, Sabrina Gilliam, Carol A. Glaser, Jill K. Hacker, Katya Ledin, Sharon L. Messenger, Christina Morales, Emily A. Smith, Joel R. Sevinsky, Russell B. Corbett-Detig, Joseph DeRisi, Kathleen Jacobson, the COVIDNet Consortium, Summer Adams, Phacharee Arunleung, Matthew Bacinskas, Cynthia Bernas, Ricardo Berumen, Brandon Brown, Teal Bullick, Lyndsey Chaille, Alice Chen, Giorgio Cosentino, Yocelyn Cruz, Nick D’Angelo, Mojgan Deldari, Alex Espinosa, Ambar Espinoza, Shiffen Getabecha, Madeleine Glenn, Bianca Gonzaga, Ydelita Gonzales, Melanie Greengard, Hugo Guevara, Kim Hansard, April Hatada, Monica Haw, Thalia Huynh, Chantha Kath, Paul B. Kimsey, Deidra Lemoine, Ruth Lopez, Blanca Molinar, Samantha Munoz, Robert Nakamura, Nichole Osugi, Tasha Padilla, Chao-Yang Pan, Mayuri V. Panditrao, Chris Preas, Will Probert, Alexa Quintana, Maria Uribe-Fuentes, Mayra Ramirez, Clarence Reyes, Estela Saguar, Maria Salas, Ioana Seritan, Brandon Stavig, Hilary Tamnanchit, Serena Ting, Cindy Wong, Chelsea Wright, Shigeo Yagi, Venice Servellita, Alicia Sotomayor-Gonzalez, Charles Y. Chiu, Isabel Bjork, Joshua Kapp, Anouk van den Bout, Ellen Kephart, Mawadda Alnaeeli, Hau-Ling Poon, Scott Topper, Marzieh Shafii, Sara Sowko, Stephanie Trammell, Erik Wolfsohn, Patrick Ayscue, Amy Kistler, Emily Crawford, Cristina Tato, Valeria Arboledaz, Eleazar Eskin, Laila M. Sathe, Jacek Skarbinski, Abigail Duque, Jeffrey Schapiro, Ivy Yeung, Rama Ghatti, Zahra Shajani-Yi, Jacob M. Garrigues, Nicole Green, Peera Hemarajata, Carlos Anaya, Donna Ferguson, Beatrix Kapuszinsky, Favian Ramirez, Felipe Sta Agueda, Julia Wolfe, David Haussler, Marc Perry, Jakob McBroome, Nhi Duong, Deborah Forester, Anthony Gonzalez, Maria J. Victorio, Anna Liza M. Manlutac, Jeremy Corrigan, Nicholas S. Rhoades, Lina Castro, Godfred Masinde, Harmeet Kaur, Monica Paniagua-Alexander, Katrina G. Erwin, Glen Miller, Frances N. Sidhu, Morris Jones, Sangita Kothari, Christopher Ngo, Brandon Bonin, Daniel Castillo, Rensen Khoshabian, Kristian Andersen, Mark Zeller, Lisa Critchett, Carlos Gonzalez, Iryna V. Goraichuk, Rachel Rees, Frank Ambrosio, Curtis J. Kapsak, Kevin G. Libuit, Michelle R. Scribner, Sage M. Wright, Vanessa B. Cadiz, Denise Lopez, Matthew Rosman, Bryan Bach, Stacia Wyman, Charlotte Acharya, Ryan Davis, Richard Michelmore, Melanie Oakes, Suzanne Sandmeyer, Kathy Borkovich, Clay H. Clark, Holly Clark, Brandon Le, Peter De Hoff, Kristen Jepsen, Rob Knight, Louise C. Laurent, Zack Aralis, Carolina Arias, Varuzhan Balasanyan, Mark Duhon, Xinmin Li, Eric Chow, Nicole Leung, Delsy Martinez, Tyler T. Miyasaki, Ashlee Clow, Jared Hoffman, Thomas Rush

Publikováno v: Frontiers in Public Health, Vol 11 (2023)

IntroductionThe SARS-CoV-2 pandemic represented a formidable scientific and technological challenge to public health due to its rapid spread and evolution. To meet these challenges and to characterize the virus over time, the State of California esta

Externí odkaz: https://doaj.org/article/70d4419c72944f60bdbb705c74bc8a0f

The Eco-epidemiology of Pacific Coast Tick Fever in California.

Autor: Kerry A Padgett, Denise Bonilla, Marina E Eremeeva, Carol Glaser, Robert S Lane, Charsey Cole Porse, Martin B Castro, Sharon Messenger, Alex Espinosa, Jill Hacker, Anne Kjemtrup, Bonnie Ryan, Jamesina J Scott, Renjie Hu, Melissa Hardstone Yoshimizu, Gregory A Dasch, Vicki Kramer

Publikováno v: PLoS Neglected Tropical Diseases, Vol 10, Iss 10, p e0005020 (2016)

Rickettsia philipii (type strain "Rickettsia 364D"), the etiologic agent of Pacific Coast tick fever (PCTF), is transmitted to people by the Pacific Coast tick, Dermacentor occidentalis. Following the first confirmed human case of PCTF in 2008, 13 ad

Externí odkaz: https://doaj.org/article/fb04cc0196774ac8be079d9c54621457

Nuevo reporte de Sphictyrtus intermedius Stal (Hemiptera: Coreidae) en Boquete, Chiriquí, Panamá

Autor: Rubén Darío Collantes - González, Alex Ríos-Moreno, Alex Espinosa - Rivas, Alonso Santos-Murgas

Publikováno v: Revista Investigación Agraria. 5:7-12

Los chinches (Hemiptera), son un grupo de insectos diverso en especies y hábitos alimenticios, por lo cual resulta importante identificarlos correctamente en el ecosistema, para determinar si representan o no algún potencial problema como plaga. El

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::a8354b6f65f98b921da21344e3c05200
https://doi.org/10.47840/reina.5.1.1820

Transmission, infectivity, and neutralization of a spike L452R SARS-CoV-2 variant

Autor: Carlos Anaya, Jill K. Hacker, Ursula Schulze-Gahmen, Monica Haw, Carl L. Hanson, Chantha Kath, Debra A. Wadford, Miguel Garcia-Knight, Phillip A. Frankino, Mir M. Khalid, Jing Cheng, Claudia Sanchez San Martin, Donna Ferguson, Xianding Deng, Melanie Ott, Steve Miller, Raul Andino, Liana F. Lareau, John Bell, Mary Kate Morris, G. Renuka Kumar, Jennifer M. Hayashi, Charles Y. Chiu, Dustin R. Glasner, Peter V. Lidsky, Peera Hemarajata, Haridha Shivram, Bharath Sreekumar, Stacia K. Wyman, Sarah McMahon, Yinghong Xiao, Nicole M. Green, Scot Federman, Pei-Yi Chen, Venice Servellita, Taha Y. Taha, Nikitha P. Reddy, Jessica Streithorst, Joanna Balcerek, Candace Wang, Jordan E. Taylor, Kevin Reyes, Camille R. Simoneau, Alicia Sotomayor-Gonzalez, Amelia S. Gliwa, Alex Espinosa

Publikováno v: Cell
Cell, vol 184, iss 13
medRxiv
article-version (status) pre
article-version (number) 1

We identified an emerging SARS-CoV-2 variant by viral whole-genome sequencing of 2,172 nasal/nasopharyngeal swab samples from 44 counties in California, a state in the Western United States. Named B.1.427/B.1.429 to denote its 2 lineages, the variant

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f3a5005b11c981ed32272a213aa6b220
http://europepmc.org/articles/PMC8057738

Identification of a Polymorphism in the N Gene of SARS-CoV-2 That Adversely Impacts Detection by Reverse Transcription-PCR

Autor: Alex Espinosa, Vida Ahyong, Joseph L. DeRisi, Minh Phuong Nguyen, Cristina M. Tato, Lienna Y. Chan, Wesley Wu, Amy Kistler, Karan D. Bhatt, Norma Neff, Andreas S. Puschnik, Debra A. Wadford, Joshua Batson, Sabrina A Mann, Steve Miller, Patrick Ayscue, David Dynerman, Simon Paul, Sidney M Bell, Manu Vanaerschot, Emily D. Crawford, James T. Webber, Angela M. Detweiler, Jack Kamm, John Bell, Michelle Tan, Si Noon Hong

Publikováno v: Journal of Clinical Microbiology

Since April 7, 2020, our COVID-19 diagnostic laboratory (CLIAHUB) has received samples from multiple counties in California - our RT-PCR protocol (1) employs N-gene (NIID_2019-nCov_N_F2/R2ver3/P2 (Japan) (2)) and E-gene (E_Sarbeco_F/R/P1 (Germany) (3

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::09abaeb09acb14a67cfcc93553d9297f