Zobrazeno 1 - 8
of 8
pro vyhledávání: '"Alex D. Thomas"'
Autor:
Paula B. Matheus Carnevali, Adi Lavy, Alex D. Thomas, Alexander Crits-Christoph, Spencer Diamond, Raphaël Méheust, Matthew R. Olm, Allison Sharrar, Shufei Lei, Wenming Dong, Nicola Falco, Nicholas Bouskill, Michelle E. Newcomer, Peter Nico, Haruko Wainwright, Dipankar Dwivedi, Kenneth H. Williams, Susan Hubbard, Jillian F. Banfield
Publikováno v:
Microbiome, Vol 9, Iss 1, Pp 1-23 (2021)
Abstract Background Biogeochemical exports from watersheds are modulated by the activity of microorganisms that function over micron scales. Here, we tested the hypothesis that meander-bound regions share a core microbiome and exhibit patterns of met
Externí odkaz:
https://doaj.org/article/11bcfb2d746b455399a7398f30bb8085
Autor:
Alexander L. Jaffe, Alex D. Thomas, Christine He, Ray Keren, Luis E. Valentin-Alvarado, Patrick Munk, Keith Bouma-Gregson, Ibrahim F. Farag, Yuki Amano, Rohan Sachdeva, Patrick T. West, Jillian F. Banfield
Publikováno v:
mBio, Vol 12, Iss 4 (2021)
ABSTRACT Candidate Phyla Radiation (CPR) bacteria are small, likely episymbiotic organisms found across Earth’s ecosystems. Despite their prevalence, the distribution of CPR lineages across habitats and the genomic signatures of transitions among t
Externí odkaz:
https://doaj.org/article/cafaa700979043c3bf6649332329a31c
Autor:
Ray Keren, Patrick T. West, Keith Bouma-Gregson, Ibrahim F. Farag, Patrick Munk, Luis E. Valentin-Alvarado, Jillian F. Banfield, Alex D. Thomas, Alexander L. Jaffe, Rohan Sachdeva, Christine He, Yuki Amano
Publikováno v:
mBio, vol 12, iss 4
mBio, Vol 12, Iss 4 (2021)
Jaffe, A L, Thomas, A D, He, C, Keren, R, Valentin-Alvarado, L E, Munk, P, Bouma-Gregson, K, Farag, I F, Amano, Y, Sachdeva, R, West, P T, Banfield, J F & Giovannoni, S J (ed.) 2021, ' Patterns of Gene Content and Co-occurrence Constrain the Evolutionary Path toward Animal Association in Candidate Phyla Radiation Bacteria ', mBio, vol. 12, no. 4, e00521-21 . https://doi.org/10.1128/mBio.00521-21
mBio
mBio, Vol 12, Iss 4 (2021)
Jaffe, A L, Thomas, A D, He, C, Keren, R, Valentin-Alvarado, L E, Munk, P, Bouma-Gregson, K, Farag, I F, Amano, Y, Sachdeva, R, West, P T, Banfield, J F & Giovannoni, S J (ed.) 2021, ' Patterns of Gene Content and Co-occurrence Constrain the Evolutionary Path toward Animal Association in Candidate Phyla Radiation Bacteria ', mBio, vol. 12, no. 4, e00521-21 . https://doi.org/10.1128/mBio.00521-21
mBio
Candidate Phyla Radiation (CPR) bacteria are small, likely episymbiotic organisms found across Earth's ecosystems. Despite their prevalence, the distribution of CPR lineages across habitats and the genomic signatures of transitions among these habita
Autor:
Matthew R. Olm, Jillian F. Banfield, Kenneth H. Williams, Raphaël Méheust, Adi Lavy, Dipankar Dwivedi, Wenming Dong, Haruko Wainwright, Spencer Diamond, Allison Sharrar, Alex D. Thomas, Alexander Crits-Christoph, Susan S. Hubbard, Paula B. Matheus Carnevali, Peter S. Nico, Nicholas J. Bouskill, Shufei Lei, Michelle Newcomer, Nicola Falco
Publikováno v:
Microbiome, vol 9, iss 1
Microbiome, Vol 9, Iss 1, Pp 1-23 (2021)
Microbiome
Microbiome, Vol 9, Iss 1, Pp 1-23 (2021)
Microbiome
Background Biogeochemical exports from watersheds are modulated by the activity of microorganisms that function over micron scales. Here, we tested the hypothesis that meander-bound regions share a core microbiome and exhibit patterns of metabolic po
Autor:
Kaushal Sharma, Alex D. Thomas, Galina Ovchinnikova, Dimitri Stamatis, Jon Bertsch, Supratim Mukherjee, Olena Verezemska, T. B. K. Reddy, Rida Ali, Nikos C. Kyrpides, Michelle Isbandi
Publikováno v:
Mukherjee, S; Stamatis, D; Bertsch, J; Ovchinnikova, G; Verezemska, O; Isbandi, M; et al.(2017). Genomes OnLine Database (GOLD) v.6: Data updates and feature enhancements. Nucleic Acids Research, 45(D1), D446-D456. doi: 10.1093/nar/gkw992. Lawrence Berkeley National Laboratory: Retrieved from: http://www.escholarship.org/uc/item/71j5h0tz
Nucleic acids research, vol 45, iss D1
Nucleic Acids Research
Nucleic acids research, vol 45, iss D1
Nucleic Acids Research
© The Author(s) 2016. The Genomes Online Database (GOLD) (https://gold. jgi.doe.gov) is a manually curated data management system that catalogs sequencing projects with associated metadata from around the world. In the current version of GOLD (v.6),
Autor:
Lesley A. Warren, Jennifer A. Doudna, Keith Bouma-Gregson, Rohan Sachdeva, Anne-Catherine Lehours, Christine He, Jamie H. D. Cate, Jinglie Zhou, Ray Keren, Alex D. Thomas, Fred R. Ward, Patrick Munk, Joanne M. Santini, Mary E. Power, Susan T.L. Harrison, Cindy J. Castelle, Alexander J. Probst, Raphaël Méheust, Christine L. Sun, Kari M. Finstad, Adi Lavy, Kelly C. Wrighton, Mikayla A. Borton, Lin-Xing Chen, Jillian F. Banfield, Karthik Anantharaman, Yuki Amano, Brandon Brooks, Ibrahim F. Farag, Daniela S. Aliaga Goltsman, David A. Relman, Ronald Amundson, Alexander L. Jaffe, Paula Matheus-Carnevali, Matthew R. Olm, Wen-Jun Li, Shufei Lei, Audra E. Devoto, Susannah G. Tringe, Tara Colenbrander Nelson, Basem Al-Shayeb, Michael J. Morowitz, Rose S. Kantor
Phage typically have small genomes and depend on their bacterial hosts for replication. DNA sequenced from many diverse ecosystems revealed hundreds of huge phage genomes, between 200 kbp and 716 kbp in length. Thirty-four genomes were manually curat
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::8b5b0ee9cd7ebb0df9ec3dca5b96ec3d
Autor:
Elizabeth A. Lobos, Ioanna Pagani, T. B. K. Reddy, Dimitri Stamatis, Jon Bertsch, Nikos C. Kyrpides, Alex D. Thomas, Jyothi Mallajosyula, Jakob Jansson, Michelle Isbandi
Publikováno v:
Thomas, Alex D.; Stamatis, Dimitri; Bertsch, Jon; Isbandi, Michelle; Jansson, Jakob; Mallajosyula, Jyothi; et al.(2014). The Genomes OnLine Database (GOLD) v.5: a metadata management system based on a four level (meta)genome project classifications. Nucleic Acids Research. Lawrence Berkeley National Laboratory: Lawrence Berkeley National Laboratory. Retrieved from: http://www.escholarship.org/uc/item/2gk413jc
Nucleic Acids Research
Nucleic Acids Research
The Genomes OnLine Database (GOLD, http://www.genomesonline.org) is a comprehensive online resource to catalogue and monitor genetic studies worldwide. GOLD provides up-to-date status on complete and ongoing sequencing projects along with a broad arr
Autor:
Natalia Ivanova, Emiley A. Eloe-Fadrosh, David Paez-Espino, Marcel Huntemann, Edward M. Rubin, Alex D. Thomas, Natalia Mikhailova, Georgios A. Pavlopoulos, Nikos C. Kyrpides
Publikováno v:
Nature. 536(7617)
Viruses are the most abundant biological entities on Earth, but challenges in detecting, isolating, and classifying unknown viruses have prevented exhaustive surveys of the global virome. Here we analysed over 5 Tb of metagenomic sequence data from 3