VDJSeq-Solver: in silico V(D)J recombination detection tool.

Autor: Giulia Paciello, Andrea Acquaviva, Chiara Pighi, Alberto Ferrarini, Enrico Macii, Alberto Zamo', Elisa Ficarra

Publikováno v: PLoS ONE, Vol 10, Iss 3, p e0118192 (2015)

In this paper we present VDJSeq-Solver, a methodology and tool to identify clonal lymphocyte populations from paired-end RNA Sequencing reads derived from the sequencing of mRNA neoplastic cells. The tool detects the main clone that characterises the

Externí odkaz: https://doaj.org/article/2baf715f49284a72971246f3f87c0498

Applying Data Warehousing to a Phase III Clinical Trial From the Fondazione Italiana Linfomi Ensures Superior Data Quality and Improved Assessment of Clinical Outcomes

Autor: Andrea Evangelista, Mariella Lo Schirico, Rebecca Sandrone, Gabriella Balestra, Filippo Ballerini, Marco Ghislieri, Elisa Genuardi, Alberto Zamo, Andrés J.M. Ferreri, Anna Lia Molinari, Cristina Castagneri, Mario Boccadoro, Marco Ladetto, Simone Ferrero, Paola Omedè, Daniela Barbero, Sergio Cortelazzo, Samanta Rosati, Luca Arcaini, Gian Maria Zaccaria

Publikováno v: JCO Clin Cancer Inform

PURPOSE Data collection in clinical trials is becoming complex, with a huge number of variables that need to be recorded, verified, and analyzed to effectively measure clinical outcomes. In this study, we used data warehouse (DW) concepts to achieve

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::8ccec863952ea779958e3998d44e686d
https://doi.org/10.1200/cci.19.00049

Nitrogen limitation-induced adaptive response and lipogenesis in the Antarctic yeast Rhodotorula mucilaginosa M94C9

Autor: Miguel Rosas-Paz, Alberto Zamora-Bello, Nayeli Torres-Ramírez, Diana Villarreal-Huerta, Lucero Romero-Aguilar, Juan Pablo Pardo, Mohammed El Hafidi, Georgina Sandoval, Claudia Segal-Kischinevzky, James González

Publikováno v: Frontiers in Microbiology, Vol 15 (2024)

The extremotolerant red yeast Rhodotorula mucilaginosa displays resilience to diverse environmental stressors, including cold, osmolarity, salinity, and oligotrophic conditions. Particularly, this yeast exhibits a remarkable ability to accumulate lip

Externí odkaz: https://doaj.org/article/59afa9190e5d48c38370c6a3c004b45b

KMT2D mutations and TP53 disruptions are poor prognostic biomarkers in mantle cell lymphoma receiving high-dose therapy:a FIL study

Autor: Abdurraouf Mokhtar Mahmoud, Chiara Favini, Kirsten Grønbæk, Domenico Novero, Armando Santoro, Davide Rossi, Arne Kolstad, Andrea Rinaldi, Andrés J.M. Ferreri, Valeria Spina, Christian Winther Eskelund, Simone Ferrero, Paola Ghione, Daniela Barbero, Sergio Cortelazzo, Andrea Evangelista, Marco Ladetto, Vittorio Stefoni, Mattia Schipani, Alice Di Rocco, Fary Diop, Mats Jerkeman, Riccardo Moia, Francesco Bertoni, A. L. Molinari, Andrea Piccin, Gianluca Gaidano, Alberto Zamo, Christina Dahl, Alessio Bruscaggin, Marco Paulli, Ivo Kwee, Maria Gomes da Silva

Publikováno v: Ferrero, S, Rossi, D, Rinaldi, A, Bruscaggin, A, Spina, V, Eskelund, C W, Evangelista, A, Moia, R, Kwee, I, Dahl, C, Di Rocco, A, Stefoni, V, Diop, F, Favini, C, Ghione, P, Mahmoud, A M, Schipani, M, Kolstad, A, Barbero, D, Novero, D, Paulli, M, Zamò, A, Jerkeman, M, Gomez Da Silva, M, Santoro, A, Molinari, A, Ferreri, A, Grønbæk, K, Piccin, A, Cortelazzo, S, Bertoni, F, Ladetto, M & Gaidano, G 2020, ' KMT2D mutations and TP53 disruptions are poor prognostic biomarkers in mantle cell lymphoma receiving high-dose therapy : a FIL study ', Haematologica, vol. 105, no. 6, pp. 1604-1612 . https://doi.org/10.3324/haematol.2018.214056
Haematologica

In recent years, the outcome of mantle cell lymphoma (MCL) has improved, especially in younger patients, receiving cytarabine-containing chemoimmunotherapy and autologous stem cell transplantation. Nevertheless, a proportion of MCL patients still exp

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::71bb4bed69ead5fc1ced7539a5c7f058
https://curis.ku.dk/portal/da/publications/kmt2d-mutations-and-tp53-disruptions-are-poor-prognostic-biomarkers-in-mantle-cell-lymphoma-receiving-highdose-therapy(f78720d5-b8ac-4f69-b123-a83649e8457d).html

MYC-related microRNAs signatures in non-Hodgkin B-cell lymphomas and their relationships with core cellular pathways

Autor: Simonetta Zupo, Giorgio Malpeli, Alberto Zamo, Serena Pedron, Stefano Barbi, George A. Calin, Anna Bertolaso, Maria Teresa Scupoli, Carlo M. Croce, Mauro Krampera, Matteo Brunelli, Gabriele Tosadori, Aldo Scarpa, Paul Takam Kamga, Corinna Greco

Publikováno v: Web of Science
Oncotarget

// Giorgio Malpeli 1, 2 , Stefano Barbi 2 , Gabriele Tosadori 3 , Corinna Greco 4 , Simonetta Zupo 5 , Serena Pedron 2 , Matteo Brunelli 2 , Anna Bertolaso 2 , Maria Teresa Scupoli 6 , Mauro Krampera 4 , Paul Takam Kamga 3 , Carlo Maria Croce 7 , Geo

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::5085de507a605fc0cc0bf6a6376d143a
https://doi.org/10.18632/oncotarget.25707