Zobrazeno 1 - 10
of 31
pro vyhledávání: '"Alberto Santos-Zavaleta"'
Autor:
Ingrid M. Keseler, Socorro Gama-Castro, Amanda Mackie, Richard Billington, César Bonavides-Martínez, Ron Caspi, Anamika Kothari, Markus Krummenacker, Peter E. Midford, Luis Muñiz-Rascado, Wai Kit Ong, Suzanne Paley, Alberto Santos-Zavaleta, Pallavi Subhraveti, Víctor H. Tierrafría, Alan J. Wolfe, Julio Collado-Vides, Ian T. Paulsen, Peter D. Karp
Publikováno v:
Frontiers in Microbiology, Vol 12 (2021)
The EcoCyc model-organism database collects and summarizes experimental data for Escherichia coli K-12. EcoCyc is regularly updated by the manual curation of individual database entries, such as genes, proteins, and metabolic pathways, and by the pro
Externí odkaz:
https://doaj.org/article/3e5385087dd74fe2b99b461d7b140fcf
Autor:
Oscar Lithgow-Serrano, Socorro Gama-Castro, Cecilia Ishida-Gutiérrez, Citlalli Mejía-Almonte, Víctor H. Tierrafría, Sara Martínez-Luna, Alberto Santos-Zavaleta, David Velázquez-Ramírez, Julio Collado-Vides
Publikováno v:
Journal of Biomedical Semantics, Vol 10, Iss 1, Pp 1-14 (2019)
Abstract Background The ability to express the same meaning in different ways is a well-known property of natural language. This amazing property is the source of major difficulties in natural language processing. Given the constant increase in publi
Externí odkaz:
https://doaj.org/article/f133b23bf096497ca7efcbaa05005aec
Autor:
Alberto Santos-Zavaleta, Mishael Sánchez-Pérez, Heladia Salgado, David A. Velázquez-Ramírez, Socorro Gama-Castro, Víctor H. Tierrafría, Stephen J. W. Busby, Patricia Aquino, Xin Fang, Bernhard O. Palsson, James E. Galagan, Julio Collado-Vides
Publikováno v:
BMC Biology, Vol 16, Iss 1, Pp 1-12 (2018)
Abstract Background Our understanding of the regulation of gene expression has benefited from the availability of high-throughput technologies that interrogate the whole genome for the binding of specific transcription factors and gene expression pro
Externí odkaz:
https://doaj.org/article/62842013a20a414b8d96469a17759c51
Autor:
David A. Velázquez-Ramírez, Cecilia Ishida-Gutiérrez, Socorro Gama-Castro, Citlalli Mejía-Almonte, Víctor H. Tierrafría, Julio Collado-Vides, Sara Martínez-Luna, Alberto Santos-Zavaleta, Oscar Lithgow-Serrano
Publikováno v:
Journal of Biomedical Semantics, Vol 10, Iss 1, Pp 1-14 (2019)
Journal of Biomedical Semantics
Journal of Biomedical Semantics
Background The ability to express the same meaning in different ways is a well-known property of natural language. This amazing property is the source of major difficulties in natural language processing. Given the constant increase in published lite
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::de188083d5b849c1c18c1c1cf316f7fb
http://link.springer.com/article/10.1186/s13326-019-0200-x
http://link.springer.com/article/10.1186/s13326-019-0200-x
Autor:
David A. Velázquez-Ramírez, Ron Caspi, César Bonavides-Martínez, Suzanne M. Paley, Daniel Weaver, Peter D. Karp, Markus Krummenacker, Julio Collado-Vides, Luis Muñiz-Rascado, Anamika Kothari, Alberto Santos-Zavaleta, Carol A. Fulcher, Richard Billington, Quang Ong, Martín Peralta-Gil, Mario Latendresse, Socorro Gama-Castro, Ian T. Paulsen, Amanda Mackie, Pallavi Subhraveti, Ingrid M. Keseler
Publikováno v:
Nucleic Acids Research
EcoCyc (EcoCyc.org) is a freely accessible, comprehensive database that collects and summarizes experimental data for Escherichia coli K-12, the best-studied bacterial model organism. New experimental discoveries about gene products, their function a
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::446e62cbf5fb3512be82b049b095cc16
https://doi.org/10.1093/nar/gkw1003
https://doi.org/10.1093/nar/gkw1003
Autor:
James E. Galagan, Cecilia Ishida-Gutiérrez, Julio Collado-Vides, Socorro Gama-Castro, Kevin Alquicira-Hernández, César Bonavides-Martínez, Jair S. García-Sotelo, Alberto Santos-Zavaleta, Heladia Salgado, Luis Muñiz-Rascado, David A. Velázquez-Ramírez, Laura Gómez-Romero, Víctor Del Moral-Chávez, Carlos-Francisco Méndez-Cruz, Mishael Sánchez-Pérez, Pablo Peña-Loredo, Daniela Ledezma-Tejeida
Publikováno v:
Nucleic Acids Research
RegulonDB, first published 20 years ago, is a comprehensive electronic resource about regulation of transcription initiation of Escherichia coli K-12 with decades of knowledge from classic molecular biology experiments, and recently also from high-th
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::110e2d03ec9378fc567540767d3b1846
https://pubmed.ncbi.nlm.nih.gov/30395280
https://pubmed.ncbi.nlm.nih.gov/30395280
Autor:
Mishael Sánchez-Pérez, Julio Collado-Vides, David A. Velázquez-Ramírez, Alberto Santos-Zavaleta, Ernesto Pérez-Rueda
Publikováno v:
BMC Genomics, Vol 20, Iss 1, Pp 1-13 (2019)
BMC Genomics
BMC Genomics
Background Crl, identified for curli production, is a small transcription factor that stimulates the association of the σS factor (RpoS) with the RNA polymerase core through direct and specific interactions, increasing the transcription rate of gene
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::55840999c9f23bfb6f14b4ea7b570f39
https://doi.org/10.1101/410621
https://doi.org/10.1101/410621
Autor:
James E. Galagan, Bernhard O. Palsson, Socorro Gama-Castro, Alberto Santos-Zavaleta, Stephen J. W. Busby, Víctor H. Tierrafría, Julio Collado-Vides, Heladia Salgado, Mishael Sánchez-Pérez, Patricia Aquino, Xin Fang, David A. Velázquez-Ramírez
Publikováno v:
Santos-Zavaleta, A, Sanchez-Perez, M, Salgado, H, Velazquez-Ramirez, D A, Gama-Castro, S, Tierrafria, V H, Busby, S J W, Aquino, P, Fang, X, Palsson, B O, Galagan, J E & Collado-Vides, J 2018, ' A unified resource for transcriptional regulation in Escherichia coli K-12 incorporating high-throughput-generated binding data into RegulonDB version 10.0 ', B M C Biology, vol. 16, 91 . https://doi.org/10.1186/s12915-018-0555-y
BMC Biology
BMC Biology, Vol 16, Iss 1, Pp 1-12 (2018)
BMC Biology
BMC Biology, Vol 16, Iss 1, Pp 1-12 (2018)
Background: Our understanding of the regulation of gene expression has benefited from the availability of high-throughput technologies that interrogate the whole genome for the binding of specific transcription factors and gene expression profiles. I
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6d400758903e01ef090ab522a7664f94
https://doi.org/10.1186/s12915-018-0555-y
https://doi.org/10.1186/s12915-018-0555-y
Autor:
Peter D. Karp, Wai Kit Ong, Suzanne Paley, Richard Billington, Ron Caspi, Carol Fulcher, Anamika Kothari, Markus Krummenacker, Mario Latendresse, Peter E. Midford, Pallavi Subhraveti, Socorro Gama-Castro, Luis Muñiz-Rascado, César Bonavides-Martinez, Alberto Santos-Zavaleta, Amanda Mackie, Julio Collado-Vides, Ingrid M. Keseler, Ian Paulsen
Publikováno v:
EcoSal Plus. 8
EcoCyc is a bioinformatics database available at EcoCyc.org that describes the genome and the biochemical machinery of Escherichia coli K-12 MG1655. The long-term goal of the project is to describe the complete molecular catalog of the E. coli cell,
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a97bba7eb50a76bb5892b9a0a5b04227
https://doi.org/10.1128/ecosalplus.esp-0006-2018
https://doi.org/10.1128/ecosalplus.esp-0006-2018
Autor:
Heladia Salgado, Alejandra López-Fuentes, Alejandra Medina-Rivera, Kevin Alquicira-Hernández, Jair S. García-Sotelo, Liliana Porrón-Sotelo, Lucia Pannier, Julio Collado-Vides, Socorro Gama-Castro, Luis Muñiz-Rascado, Alberto Santos-Zavaleta, Irma Martínez-Flores, Ernesto Pérez-Rueda, Jaime A. Castro-Mondragon, Shirley Alquicira-Hernández, Daniela Ledezma-Tejeida, Fabio Rinaldi, César Bonavides-Martínez, Anastasia Hernández-Koutoucheva, Víctor Del Moral-Chávez, Hilda Solano-Lira
Publikováno v:
Nucleic Acids Research
Nucleic Acids Research, Oxford University Press, 2016, 44 (D1), pp.D133-D143. ⟨10.1093/nar/gkv1156⟩
Nucleic Acids Research, 2016, 44 (D1), pp.D133-D143. ⟨10.1093/nar/gkv1156⟩
Nucleic Acids Research, Oxford University Press, 2016, 44 (D1), pp.D133-D143. ⟨10.1093/nar/gkv1156⟩
Nucleic Acids Research, 2016, 44 (D1), pp.D133-D143. ⟨10.1093/nar/gkv1156⟩
International audience; RegulonDB (http://regulondb.ccg.unam.mx) is one of the most useful and important resources on bacterial gene regulation, as it integrates the scattered scientific knowledge of the best-characterized organism, Escherichia coli
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::66532f66aa8e628dbb8419ab707e4984
https://doi.org/10.1093/nar/gkv1156
https://doi.org/10.1093/nar/gkv1156