Nuclear environmental DNA resolves fine-scale population genetic structure in an aquatic habitat

Autor: Zifang Liu, Mary A. Kishe, Nestory P. Gabagambi, Asilatu H. Shechonge, Benjamin P. Ngatunga, Katie Smith, Andrew D. Saxon, Alan G. Hudson, Tyler Linderoth, George F. Turner, Rupert A. Collins, Martin J. Genner

Publikováno v: iScience, Vol 27, Iss 1, Pp 108669- (2024)

Summary: There is considerable potential for nuclear genomic material in environmental DNA (eDNA) to inform us of population genetic structure within aquatic species. We tested if nuclear allelic composition data sourced from eDNA can resolve fine sc

Externí odkaz: https://doaj.org/article/4062208fc4a84bf2ade03d01471fb1a9

Epigenetic divergence during early stages of speciation in an African crater lake cichlid fish

Autor: Grégoire Vernaz, Alan G. Hudson, M. Emília Santos, Bettina Fischer, Madeleine Carruthers, Asilatu H. Shechonge, Nestory P. Gabagambi, Alexandra M. Tyers, Benjamin P. Ngatunga, Milan Malinsky, Richard Durbin, George F. Turner, Martin J. Genner, Eric A. Miska

Publikováno v: Vernaz, Grégoire; Hudson, Alan G; Santos, M Emília; Fischer, Bettina; Carruthers, Madeleine; Shechonge, Asilatu H; Gabagambi, Nestory P; Tyers, Alexandra M; Ngatunga, Benjamin P; Malinsky, Milan; Durbin, Richard; Turner, George F; Genner, Martin J; Miska, Eric A (2022). Epigenetic divergence during early stages of speciation in an African crater lake cichlid fish. Nature ecology & evolution, 6(12), pp. 1940-1951. Nature Publishing Group 10.1038/s41559-022-01894-w
Vernaz, G, Hudson, A G, Santos, M E, Fischer, B, Carruthers, M, Shechonge, A H, Gabagambi, N P, Tyers, A M, Ngatunga, B P, Malinsky, M, Durbin, R, Turner, G F, Genner, M J & Miska, E A 2022, ' Epigenetic divergence during early stages of speciation in an African crater lake cichlid fish ', Nature Ecology and Evolution, vol. 6, no. 12, pp. 1940-1951 . https://doi.org/10.1038/s41559-022-01894-w

Funder: Wellcome Trust (Wellcome); doi: https://doi.org/10.13039/100004440
Funder: Cancer Research UK (CRUK); doi: https://doi.org/10.13039/501100000289
Funder: EC | EU Framework Programme for Research and Innovation H2020 | H2020 Priority

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::9774f9d1ae789a9d02713ad0da988d2e
https://www.repository.cam.ac.uk/handle/1810/339807

Ecological speciation in European whitefish is driven by a large-gaped predator

Autor: Kim Præbel, Mikael Peedu, Karin A. Nilsson, Petter Johansson, Göran Englund, Åke Brännström, Catherine L. Hein, Pia Bartels, Sven-Ola Öhlund, Gunnar Öhlund, Kenyon B. Mobley, Mats Bodin, Alan G. Hudson

Publikováno v: Evolution Letters
Evolution Letters, Vol 4, Iss 3, Pp 243-256 (2020)

Lake-dwelling fish that form species pairs/flocks characterized by body size divergence are important model systems for speciation research. While several sources of divergent selection have been identified in these systems, their importance for driv

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::24a88bea8ad4412b997668d6a3c0aafa
http://urn.kb.se/resolve?urn=urn:nbn:se:umu:diva-171947

Localisation and origin of the bacteriochlorophyll-derived photosensitizer in the retina of the deep-sea dragon fish Malacosteus niger

Autor: Ronald H. Douglas, Martin J. Genner, Julian C. Partridge, Alan G. Hudson, Hans Joachim Wagner

Publikováno v: Scientific Reports
Douglas, R H, Genner, M J, Hudson, A, Partridge, J C & Wagner, H-J 2016, ' Localisation and origin of the bacteriochlorophyll-derived photosensitizer in the retina of the deep-sea dragon fish Malacosteus niger ', Scientific Reports, vol. 6, 39395 . https://doi.org/10.1038/srep39395

Most deep-sea fish have a single visual pigment maximally sensitive at short wavelengths, approximately matching the spectrum of both downwelling sunlight and bioluminescence. However, Malcosteus niger produces far-red bioluminescence and its longwav

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::5943826bb4663adfc048b18e5208d291
http://europepmc.org/articles/PMC5171636

Rapid parallel adaptive radiations from a single hybridogenic ancestral population

Autor: Pascal Vonlanthen, Ole Seehausen, Alan G. Hudson

Publikováno v: Proceedings of the Royal Society B: Biological Sciences. 278:58-66

The Alpine lake whitefish ( Coregonus lavaretus ) species complex is a classic example of a recent radiation, associated with colonization of the Alpine lakes following the glacial retreat (less than 15 kyr BP). They have formed a unique array of end

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::0676f2cf330f7c81e6308e47ac68333a
https://doi.org/10.1098/rspb.2010.0925