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pro vyhledávání: '"Akiyama, Ryo"'
To analyze hydration effects on macromolecular diffusion, the friction coefficients of macromolecules were examined using molecular dynamics simulations with an all-atom model. In the present study, a method was introduced to decompose the molecular
Externí odkaz:
http://arxiv.org/abs/2409.17028
We calculated the spatial distribution of reduced density and pair distribution function (PDF) of solvent hard spheres near a solute using three-dimensional Ornstein-Zernike (OZ) equations coupled with closures in which Percus-Yevick (PY) and hyperne
Externí odkaz:
http://arxiv.org/abs/2311.05893
Effective interactions between like-charged particles immersed in an electrolyte solution were calculated using two integral equation theories, hypernetted-chain (HNC)-Ornstein--Zernike (OZ) and ionic Percus--Yevick 2 (IPY2)-OZ. When the HNC-OZ theor
Externí odkaz:
http://arxiv.org/abs/2206.13875
Yeh and Hummer's simplified estimation method has often been adopted to obtain diffusion coefficients for solute molecules using molecular dynamic simulation. However, the simplified formula is not necessarily valid when a small basic cell is used. T
Externí odkaz:
http://arxiv.org/abs/2205.09323
Publikováno v:
In Physica A: Statistical Mechanics and its Applications 15 June 2024 644
It is still challenging to control dynamic self-organization patterns of self-propelled particles. Although varieties of patterns associated with chirality have been observed, essential control factors determining patterns remain unclear. Here, we ex
Externí odkaz:
http://arxiv.org/abs/2101.02130
The two-dimensional ordering of bacteriorhodopsins in a lipid bilayer was studied using a binary hard-disk model. The phase diagrams were calculated, taking into account the lateral depletion effects. The critical concentrations of the protein orderi
Externí odkaz:
http://arxiv.org/abs/2011.06232
Publikováno v:
In Physica A: Statistical Mechanics and its Applications 15 November 2023 630
Autor:
Akiyama, Ryo, Yamamoto, Goshiro, Amano, Toshiyuki, Taketomi, Takafumi, Plopski, Alexander, Fujimoto, Yuichiro, Kanbara, Masayuki, Sandor, Christian, Kato, Hirokazu
Publikováno v:
In Computers & Graphics October 2020 91:129-140
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