Výsledky vyhledávání - "Aki Masunaga"

Akademický článek

Telomere-to-telomere assembly of the genome of an individual Oikopleura dioica from Okinawa using Nanopore-based sequencing

Autor: Aleksandra Bliznina, Aki Masunaga, Michael J. Mansfield, Yongkai Tan, Andrew W. Liu, Charlotte West, Tanmay Rustagi, Hsiao-Chiao Chien, Saurabh Kumar, Julien Pichon, Charles Plessy, Nicholas M. Luscombe

Publikováno v: BMC Genomics, Vol 22, Iss 1, Pp 1-18 (2021)

Abstract Background The larvacean Oikopleura dioica is an abundant tunicate plankton with the smallest (65–70 Mbp) non-parasitic, non-extremophile animal genome identified to date. Currently, there are two genomes available for the Bergen (OdB3) an

Externí odkaz: https://doaj.org/article/6cbd2f5d71814f96a6432ac5d4289d27

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Akademický článek

H3S28P Antibody Staining of Okinawan Oikopleura dioica Suggests the Presence of Three Chromosomes [version 2; peer review: 2 approved]

Autor: Andrew W. Liu, Yongkai Tan, Aki Masunaga, Aleksandra Bliznina, Charlotte West, Charles Plessy, Nicholas M. Luscombe

Publikováno v: F1000Research, Vol 9 (2021)

Oikopleura dioica is a ubiquitous marine zooplankton of biological interest owing to features that include dioecious reproduction, a short life cycle, conserved chordate body plan, and a compact genome. It is an important tunicate model for evolution

Externí odkaz: https://doaj.org/article/88a3ccbd811a4e7b871143d4841de22d

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Extreme genome scrambling in crypticOikopleura dioicaspecies

Autor: Charles Plessy, Michael J. Mansfield, Aleksandra Bliznina, Aki Masunaga, Charlotte West, Yongkai Tan, Andrew W. Liu, Jan Grašič, María Sara del Río Pisula, Gaspar Sánchez-Serna, Marc Fabrega-Torrus, Alfonso Ferrández-Roldán, Vittoria Roncalli, Pavla Navratilova, Eric M. Thompson, Takeshi Onuma, Hiroki Nishida, Cristian Cañestro, Nicholas M. Luscombe

SUMMARYGenes are not randomly distributed throughout chromosomes. How gene order evolves and how selective constraints act to preserve or vary gene order, both at the macrosyntenic level of whole chromosomes or microsyntenic level of gene blocks, are

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::18ae0a5dc21c3b9face519a22c2ca343
https://doi.org/10.1101/2023.05.09.539028

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Telomere-to-telomere assembly of the genome of an individual Oikopleura dioica from Okinawa using Nanopore-based sequencing

Autor: Andrew W. Liu, Hsiao-Chiao Chien, Charles Plessy, Michael J. Mansfield, Charlotte West, Saurabh Kumar, Yongkai Tan, Tanmay Rustagi, Aki Masunaga, Julien Pichon, Aleksandra Bliznina, Nicholas M. Luscombe

Publikováno v: BMC Genomics, Vol 22, Iss 1, Pp 1-18 (2021)
BMC Genomics

Background The larvacean Oikopleura dioica is an abundant tunicate plankton with the smallest (65–70 Mbp) non-parasitic, non-extremophile animal genome identified to date. Currently, there are two genomes available for the Bergen (OdB3) and Osaka (

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c5618857a815646a3e32e54deccaace4
https://doaj.org/article/6cbd2f5d71814f96a6432ac5d4289d27

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The cosmopolitan appendicularian Oikopleura dioica reveals hidden genetic diversity around the globe

Autor: Aki Masunaga, Michael J. Mansfield, Yongkai Tan, Andrew W. Liu, Aleksandra Bliznina, Paolo Barzaghi, Tamara L. Hodgetts, Alfonso Ferrández-Roldán, Cristian Cañestro, Takeshi A. Onuma, Charles Plessy, Nicholas M. Luscombe

Appendicularian tunicates are some of the most abundant mesozooplankton organisms with key roles in marine trophic webs and global carbon flux. Like most appendicularians with cosmopolitan distributions, Oikopleura dioica Fol, 1872 is considered a si

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::17ab9bd5df88e7dece68028b3ad25a72

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H3S28P Antibody Staining of Okinawan Oikopleura dioica Suggests the Presence of Three Chromosomes

Autor: Nicholas M. Luscombe, Yongkai Tan, Aki Masunaga, Charlotte West, Charles Plessy, Andrew W. Liu, Aleksandra Bliznina

Publikováno v: F1000Research

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::2feb72add6688eb51b2439c990a4286c
http://europepmc.org/articles/PMC7941098

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Telomere-to-telomere assembly of the genome of an individual Oikopleura dioica from Okinawa using Nanopore-based sequencing

Autor: Andrew W. Liu, Saurabh Kumar, Michael J. Mansfield, Tanmay Rustagi, Julien Pichon, Aleksandra Bliznina, Charles Plessy, Hsiao-Chiao Chien, Yongkai Tan, Nicholas M. Luscombe, Charlotte West, Aki Masunaga

BackgroundThe larvacean Oikopleura dioica is an abundant tunicate plankton with the smallest (65-70 Mbp) non-parasitic, non-extremophile animal genome identified to date. Currently, there are two genomes available for the Bergen (OdB3) and Osaka (OSK

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::8bb845936e5f928291c6dc4205874533
https://doi.org/10.1101/2020.09.11.292656

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Streamlined Sampling and Cultivation of the Pelagic Cosmopolitan Larvacean, Oikopleura dioica

Autor: Aki, Masunaga, Andrew W., Liu, Yongkai, Tan, Andrew, Scott, Nicholas M., Luscombe

Publikováno v: Journal of visualized experiments : JoVE. (160)

Oikopleura dioica is a planktonic chordate with exceptional filter-feeding ability, rapid generation time, conserved early development, and a compact genome. For these reasons, it is considered a useful model organism for marine ecological studies, e

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=pmid_dedup__::72e04dceb15660c9de008b55e2ef17da
https://pubmed.ncbi.nlm.nih.gov/32628172

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