Development of the Wheat Practical Haplotype Graph database as a resource for genotyping data storage and genotype imputation.

Autor: Jordan KW; Department of Plant Pathology, Kansas State University, Manhattan, KS 66506, USA.; USDA-ARS, Hard Winter Wheat Genetics Research Unit, Manhattan, KS 66502, USA., Bradbury PJ; USDA-ARS, Plant Soil and Nutrition Research Unit, Ithaca, NY 14853, USA., Miller ZR; Institute for Genomic Diversity, Cornell University, Ithaca, NY 14853, USA., Nyine M; Department of Plant Pathology, Kansas State University, Manhattan, KS 66506, USA., He F; Department of Plant Pathology, Kansas State University, Manhattan, KS 66506, USA., Fraser M; Department of Agronomy and Plant Genetics, University of Minnesota, St. Paul, MN 55108, USA., Anderson J; Department of Agronomy and Plant Genetics, University of Minnesota, St. Paul, MN 55108, USA., Mason E; Department of Soil and Crop Sciences, Colorado State University, Fort Collins, CO 80521, USA., Katz A; Department of Soil and Crop Sciences, Colorado State University, Fort Collins, CO 80521, USA., Pearce S; Department of Soil and Crop Sciences, Colorado State University, Fort Collins, CO 80521, USA., Carter AH; Department of Crop and Soil Sciences, Washington State University, Pullman, WA 99164, USA., Prather S; Department of Crop and Soil Sciences, Washington State University, Pullman, WA 99164, USA., Pumphrey M; Department of Crop and Soil Sciences, Washington State University, Pullman, WA 99164, USA., Chen J; Department of Plant Sciences, University of Idaho, Aberdeen, ID 83210, USA., Cook J; Department of Plant Sciences and Plant Pathology, Montana State University, Bozeman, MT 59717, USA., Liu S; Department of Soil and Crop Sciences, Texas A&M AgriLife Research, Amarillo, TX 79106, USA., Rudd JC; Department of Soil and Crop Sciences, Texas A&M AgriLife Research, Amarillo, TX 79106, USA., Wang Z; Department of Soil and Crop Sciences, Texas A&M AgriLife Research, Amarillo, TX 79106, USA., Chu C; Department of Soil and Crop Sciences, Texas A&M AgriLife Research, Amarillo, TX 79106, USA., Ibrahim AMH; Department of Soil and Crop Sciences, Texas A&M AgriLife Research, Amarillo, TX 79106, USA., Turkus J; Department of Plant, Soil and Microbial Sciences, Michigan State University, East Lansing, MI 48824, USA., Olson E; Department of Plant, Soil and Microbial Sciences, Michigan State University, East Lansing, MI 48824, USA., Nagarajan R; Department of Plant and Soil Sciences, Oklahoma State University, Stillwater, OK 74075, USA., Carver B; Department of Plant and Soil Sciences, Oklahoma State University, Stillwater, OK 74075, USA., Yan L; Department of Plant and Soil Sciences, Oklahoma State University, Stillwater, OK 74075, USA., Taagen E; Institute for Genomic Diversity, Cornell University, Ithaca, NY 14853, USA., Sorrells M; Institute for Genomic Diversity, Cornell University, Ithaca, NY 14853, USA., Ward B; USDA-ARS, Plant Science Research Unit, Raleigh, NC 27695, USA., Ren J; Department of Plant Pathology, Kansas State University, Manhattan, KS 66506, USA.; Integrative Genomics Facility, Kansas State University, Manhattan, KS 66506, USA., Akhunova A; Department of Plant Pathology, Kansas State University, Manhattan, KS 66506, USA.; Integrative Genomics Facility, Kansas State University, Manhattan, KS 66506, USA., Bai G; USDA-ARS, Hard Winter Wheat Genetics Research Unit, Manhattan, KS 66502, USA., Bowden R; USDA-ARS, Hard Winter Wheat Genetics Research Unit, Manhattan, KS 66502, USA., Fiedler J; USDA-ARS, Cereal Crops Research Unit, Fargo, ND 58102, USA., Faris J; USDA-ARS, Cereal Crops Research Unit, Fargo, ND 58102, USA., Dubcovsky J; Department of Plant Sciences, University of California-Davis, Davis, CA 95616, USA., Guttieri M; USDA-ARS, Hard Winter Wheat Genetics Research Unit, Manhattan, KS 66502, USA., Brown-Guedira G; USDA-ARS, Plant Science Research Unit, Raleigh, NC 27695, USA., Buckler E; USDA-ARS, Plant Soil and Nutrition Research Unit, Ithaca, NY 14853, USA., Jannink JL; USDA-ARS, Plant Soil and Nutrition Research Unit, Ithaca, NY 14853, USA., Akhunov ED; Department of Plant Pathology, Kansas State University, Manhattan, KS 66506, USA.

Publikováno v: G3 (Bethesda, Md.) [G3 (Bethesda)] 2022 Feb 04; Vol. 12 (2).

Genetic characterization and phylogenetic analysis of the Nigella sativa (black seed) plastome.

Autor: Lubna¹ (AUTHOR), Asaf, Sajjad¹ (AUTHOR) sajadasif2000@gmail.com, Khan, Ibrahim² (AUTHOR), Jan, Rahmatullah² (AUTHOR), Asif, Saleem² (AUTHOR), Bilal, Saqib¹ (AUTHOR), Kim, Kyung-Min² (AUTHOR) kkm@knu.ac.kr, AL-Harrasi, Ahmed¹ (AUTHOR) aharrasi@unizwa.edu.om

Publikováno v: Scientific Reports. 6/27/2024, Vol. 14 Issue 1, p1-16. 16p.

Group 3 chromosome bin maps of wheat and their relationship to rice chromosome 1

Autor: Munkvold, JD, Greene, RA, Bermudez-Kandianis, CE, La Rota, CM, Edwards, H, Sorrells, SF, Dake, T, Benscher, D, Kantety, R, Linkiewicz, AM, Dubcovsky, J, Akhunov, ED, Dvořák, J, Miftahudin, Gustafson, JP, Pathan, MS, Nguyen, HT, Matthews, DE, Chao, S, Lazo, GR, Hummel, DD, Anderson, OD, Anderson, JA, Gonzalez-Hernandez, JL, Peng, JH, Lapitan, N, Qi, LL, Echalier, B, Gill, BS, Hossain, KG, Kalavacharla, V, Kianian, SF, Sandhu, D, Erayman, M, Gill, KS, McGuire, PE, Qualset, CO, Sorrells, ME

Publikováno v: Munkvold, JD; Greene, RA; Bermudez-Kandianis, CE; La Rota, CM; Edwards, H; Sorrells, SF; et al.(2004). Group 3 chromosome bin maps of wheat and their relationship to rice chromosome 1. Genetics, 168(2), 639-650. doi: 10.1534/genetics.104.034819. UC Davis: Retrieved from: http://www.escholarship.org/uc/item/1z35h9cn

The focus of this study was to analyze the content, distribution, and comparative genome relationships of 996 chromosome bin-mapped expressed sequence tags (ESTs) accounting for 2266 restriction fragments (loci) on the homoeologous group 3 chromosome

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=od_______325::44429c1df93727b96c928eaa00e7c8ce
http://www.escholarship.org/uc/item/1z35h9cn

Analysis of expressed sequence tag loci on wheat chromosome group 4

Autor: Miftahudin, Ross, K, Ma, XF, Mahmoud, AA, Layton, J, Rodriguez Milla, MA, Chikmawati, T, Ramalingam, J, Feril, O, Pathan, MS, Surlan Momirovic, GS, Kim, S, Chema, K, Fang, P, Haule, L, Struxness, H, Birkes, J, Yaghoubian, C, Skinner, R, McAllister, J, Nguyen, V, Qi, LL, Echalier, B, Gill, BS, Linkiewicz, AM, Dubcovsky, J, Akhunov, ED, Dvořák, J, Dilbirligi, M, Gill, KS, Peng, JH, Lapitan, NLV, Bermudez-Kandianis, CE, Sorrells, ME, Hossain, KG, Kalavacharla, V, Kianian, SF, Lazo, GR, Chao, S, Anderson, OD, Gonzalez-Hernandez, J, Conley, EJ, Anderson, JA, Choi, DW, Fenton, RD, Close, TJ, McGuire, PE, Qualset, CO, Nguyen, HT, Gustafson, JP

Publikováno v: Miftahudin,; Ross, K; Ma, XF; Mahmoud, AA; Layton, J; Rodriguez Milla, MA; et al.(2004). Analysis of expressed sequence tag loci on wheat chromosome group 4. Genetics, 168(2), 651-663. doi: 10.1534/genetics.104.034827. UC Davis: Retrieved from: http://www.escholarship.org/uc/item/08s680hc

A total of 1918 loci, detected by the hybridization of 938 expressed sequence tag unigenes (ESTs) from 26 Triticeae cDNA libraries, were mapped to wheat (Triticum aestivum L.) homoeologous group 4 chromosomes using a set of deletion, ditelosomic, and

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=od_______325::82cd5fbc50585033495424aca29f5c25
http://www.escholarship.org/uc/item/08s680hc

Introgressions lead to reference bias in wheat RNA-seq analysis.

Autor: Coombes, Benedict¹ (AUTHOR) benedict.coombes@earlham.ac.uk, Lux, Thomas² (AUTHOR), Akhunov, Eduard³ (AUTHOR), Hall, Anthony¹ (AUTHOR) anthony.hall@earlham.ac.uk

Publikováno v: BMC Biology. 3/7/2024, Vol. 22 Issue 1, p1-17. 17p.