Zobrazeno 1 - 10
of 22
pro vyhledávání: '"Akbar Adjie, Pratama"'
Autor:
Ming Yan, Akbar Adjie Pratama, Sripoorna Somasundaram, Zongjun Li, Yu Jiang, Matthew B. Sullivan, Zhongtang Yu
Publikováno v:
Nature Communications, Vol 14, Iss 1, Pp 1-16 (2023)
Abstract The diverse rumen virome can modulate the rumen microbiome, but it remains largely unexplored. Here, we mine 975 published rumen metagenomes for viral sequences, create a global rumen virome database (RVD), and analyze the rumen virome for d
Externí odkaz:
https://doaj.org/article/303fe33598c847498ea764959ef07f0d
Autor:
Jiarong Guo, Ben Bolduc, Ahmed A. Zayed, Arvind Varsani, Guillermo Dominguez-Huerta, Tom O. Delmont, Akbar Adjie Pratama, M. Consuelo Gazitúa, Dean Vik, Matthew B. Sullivan, Simon Roux
Publikováno v:
Microbiome, Vol 9, Iss 1, Pp 1-13 (2021)
Abstract Background Viruses are a significant player in many biosphere and human ecosystems, but most signals remain “hidden” in metagenomic/metatranscriptomic sequence datasets due to the lack of universal gene markers, database representatives,
Externí odkaz:
https://doaj.org/article/92e6b9c035b842ceb8b91a62353eb189
Autor:
Akbar Adjie Pratama, Benjamin Bolduc, Ahmed A. Zayed, Zhi-Ping Zhong, Jiarong Guo, Dean R. Vik, Maria Consuelo Gazitúa, James M. Wainaina, Simon Roux, Matthew B. Sullivan
Publikováno v:
PeerJ, Vol 9, p e11447 (2021)
Background Viruses influence global patterns of microbial diversity and nutrient cycles. Though viral metagenomics (viromics), specifically targeting dsDNA viruses, has been critical for revealing viral roles across diverse ecosystems, its analyses d
Externí odkaz:
https://doaj.org/article/cf9912e52ab448e0a4015084874e068b
Publikováno v:
Standards in Genomic Sciences, Vol 12, Iss 1, Pp 1-14 (2017)
Abstract Here, we report the draft genome sequences of three fungal-interactive Paraburkholderia terrae strains, denoted BS110, BS007 and BS437. Phylogenetic analyses showed that the three strains belong to clade II of the genus Burkholderia , which
Externí odkaz:
https://doaj.org/article/287be6b26a3442e9b3acdfdd0daf20e4
Publikováno v:
Scientific Reports, Vol 7, Iss 1, Pp 1-14 (2017)
Abstract Bacteriophages constitute key gene transfer agents in many bacteria. Specifically, they may confer gene mobility to Paraburkholderia spp. that dwells in soil and the mycosphere. In this study, we first screened mycosphere and bulk soils for
Externí odkaz:
https://doaj.org/article/ebc849d00caa4fafbb67eaeb62c0b5ef
Publikováno v:
Frontiers in Microbiology, Vol 9 (2018)
The genus Paraburkholderia encompasses mostly environmental isolates with diverse predicted lifestyles. Genome analyses have shown that bacteriophages form a considerable portion of some Paraburkholderia genomes. Here, we analyzed the evolutionary hi
Externí odkaz:
https://doaj.org/article/fa482951bf634aa7b72fbfa04b1adaf4
Like in the human gut and other environments, viruses are probably also diverse and modulate the microbiome (both population and function) in the rumen of ruminants, but it remains largely unknown. Here we mined 975 published rumen metagenomes for vi
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::7f2281b7a9c3db77537e7b116113b323
https://doi.org/10.1101/2022.11.30.518432
https://doi.org/10.1101/2022.11.30.518432
Autor:
Akbar Adjie Pratama, Ahmed A. Zayed, Simon Roux, Ben Bolduc, Jiarong Guo, Arvind Varsani, M. Consuelo Gazitúa, Guillermo Dominguez-Huerta, Matthew B. Sullivan, Tom O. Delmont, Dean R. Vik
Publikováno v:
Microbiome, Vol 9, Iss 1, Pp 1-13 (2021)
Microbiome
Microbiome, vol 9, iss 1
Article number: 37
Microbiome
Microbiome, vol 9, iss 1
Article number: 37
BackgroundViruses are a significant player in many biosphere and human ecosystems, but most signals remain “hidden” in metagenomic/metatranscriptomic sequence datasets due to the lack of universal gene markers, database representatives, and insuf
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::324c84cbd5848a002dacfdeaa87739a3
https://doaj.org/article/92e6b9c035b842ceb8b91a62353eb189
https://doaj.org/article/92e6b9c035b842ceb8b91a62353eb189
Autor:
Ahmed A, Zayed, James M, Wainaina, Guillermo, Dominguez-Huerta, Eric, Pelletier, Jiarong, Guo, Mohamed, Mohssen, Funing, Tian, Akbar Adjie, Pratama, Benjamin, Bolduc, Olivier, Zablocki, Dylan, Cronin, Lindsey, Solden, Erwan, Delage, Adriana, Alberti, Jean-Marc, Aury, Quentin, Carradec, Corinne, da Silva, Karine, Labadie, Julie, Poulain, Hans-Joachim, Ruscheweyh, Guillem, Salazar, Elan, Shatoff, Ralf, Bundschuh, Kurt, Fredrick, Laura S, Kubatko, Samuel, Chaffron, Alexander I, Culley, Shinichi, Sunagawa, Jens H, Kuhn, Patrick, Wincker, Matthew B, Sullivan, Silvia G, Acinas, Marcel, Babin, Peer, Bork, Emmanuel, Boss, Chris, Bowler, Guy, Cochrane, Colomban, de Vargas, Gabriel, Gorsky, Lionel, Guidi, Nigel, Grimsley, Pascal, Hingamp, Daniele, Iudicone, Olivier, Jaillon, Stefanie, Kandels, Lee, Karp-Boss, Eric, Karsenti, Fabrice, Not, Hiroyuki, Ogata, Nicole, Poulton, Stéphane, Pesant, Christian, Sardet, Sabrinia, Speich, Lars, Stemmann, Shinichi, Sungawa
Publikováno v:
Science
Science, 2022, 376 (6589), pp.156-162. ⟨10.1126/science.abm5847⟩
Science, 2022, 376 (6589), pp.156-162. ⟨10.1126/science.abm5847⟩
Whereas DNA viruses are known to be abundant, diverse, and commonly key ecosystem players, RNA viruses are insufficiently studied outside disease settings. In this study, we analyzed ≈28 terabases of Global Ocean RNA sequences to expand Earth’s R
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::485c206684fbbc3414be514ec729bc91
https://pubmed.ncbi.nlm.nih.gov/35389800
https://pubmed.ncbi.nlm.nih.gov/35389800
Publikováno v:
Trends in Microbiology. 28:709-718
Microbiomes and their hosts influence each other; for instance, the microbiome improves host fitness, whereas the host supports microbiome nutrition. Most studies on this topic have focused on the role of bacteria and fungi, although research on viru
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::294b7f41cdd5df981bfc3c79cb62fd64
https://doi.org/10.1016/j.tim.2020.04.005
https://doi.org/10.1016/j.tim.2020.04.005