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Akademický článek

The chemokines CCL5 and CXCL12 exhibit high-affinity binding to N-terminal peptides of the non-cognate receptors CXCR4 and CCR5, respectively.

Autor: Kessler N; Department of Structural Biology, Weizmann Institute of Science, Rehovot, Israel., Akabayov SR; Department of Structural Biology, Weizmann Institute of Science, Rehovot, Israel., Cohen LS; Department of Chemistry and Macromolecular Assembly Institute, College of Staten Island of the City University of New York, Staten Island, NY, USA.; The Ph.D. Programs in Biochemistry and Chemistry, The Graduate Center of the City University of New York, NY, USA., Scherf T; Department of Chemical Research Support, Weizmann Institute of Science, Rehovot, Israel., Naider F; Department of Structural Biology, Weizmann Institute of Science, Rehovot, Israel.; Department of Chemistry and Macromolecular Assembly Institute, College of Staten Island of the City University of New York, Staten Island, NY, USA.; The Ph.D. Programs in Biochemistry and Chemistry, The Graduate Center of the City University of New York, NY, USA., Anglister J; Department of Structural Biology, Weizmann Institute of Science, Rehovot, Israel.

Publikováno v: The FEBS journal [FEBS J] 2024 Feb; Vol. 291 (3), pp. 458-476. Date of Electronic Publication: 2023 Dec 01.

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Akademický článek

Multiple binding modes of an N-terminal CCR5-peptide in complex with HIV-1 gp120.

Autor: Moseri A; Department of Chemical and Structural Biology, Weizmann Institute of Science, Rehovot, Israel., Akabayov SR; Department of Chemical and Structural Biology, Weizmann Institute of Science, Rehovot, Israel., Cohen LS; Department of Chemistry and Macromolecular Assembly Institute, College of Staten Island of the City University of New York, Staten Island, NY, USA.; The Graduate Center of the City University of New York, NY, USA., Naider F; Department of Chemistry and Macromolecular Assembly Institute, College of Staten Island of the City University of New York, Staten Island, NY, USA.; The Graduate Center of the City University of New York, NY, USA., Anglister J; Department of Chemical and Structural Biology, Weizmann Institute of Science, Rehovot, Israel.

Publikováno v: The FEBS journal [FEBS J] 2022 Jun; Vol. 289 (11), pp. 3132-3147. Date of Electronic Publication: 2021 Dec 28.

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Correction to 'Secondary structure determination of conserved SARS-CoV-2 RNA elements by NMR spectroscopy'.

Autor: Wacker A; Institute for Organic Chemistry and Chemical Biology, Max-von-Laue-Strasse 7, 60438 Frankfurt/M., Germany., Weigand JE; Department of Biology, Technical University of Darmstadt, Schnittspahnstrasse 10, 64287 Darmstadt, Germany., Akabayov SR; Faculty of Chemistry, Weizmann Institute of Science, 7610001 Rehovot, Israel., Altincekic N; Institute for Organic Chemistry and Chemical Biology, Max-von-Laue-Strasse 7, 60438 Frankfurt/M., Germany., Bains JK; Institute for Organic Chemistry and Chemical Biology, Max-von-Laue-Strasse 7, 60438 Frankfurt/M., Germany., Banijamali E; Department of Medical Biochemistry and Biophysics, Karolinska Institute, Biomedicum 9B, Solnavägen 9, 17177 Stockholm, Sweden., Binas O; Institute for Organic Chemistry and Chemical Biology, Max-von-Laue-Strasse 7, 60438 Frankfurt/M., Germany., Castillo-Martinez J; School of Medicine, Catholic University of Valencia, C/Quevedo 2, 46001 Valencia, Spain., Cetiner E; Institute for Organic Chemistry and Chemical Biology, Max-von-Laue-Strasse 7, 60438 Frankfurt/M., Germany., Ceylan B; Institute for Organic Chemistry and Chemical Biology, Max-von-Laue-Strasse 7, 60438 Frankfurt/M., Germany., Chiu LY; Department of Chemistry, Case Western Reserve University, Cleveland, OH 44106, USA., Davila-Calderon J; Department of Chemistry, Case Western Reserve University, Cleveland, OH 44106, USA., Dhamotharan K; Institute for Molecular Biosciences., Duchardt-Ferner E; Institute for Molecular Biosciences., Ferner J; Institute for Organic Chemistry and Chemical Biology, Max-von-Laue-Strasse 7, 60438 Frankfurt/M., Germany., Frydman L; Faculty of Chemistry, Weizmann Institute of Science, 7610001 Rehovot, Israel., Fürtig B; Institute for Organic Chemistry and Chemical Biology, Max-von-Laue-Strasse 7, 60438 Frankfurt/M., Germany., Gallego J; School of Medicine, Catholic University of Valencia, C/Quevedo 2, 46001 Valencia, Spain., Grün JT; Institute for Organic Chemistry and Chemical Biology, Max-von-Laue-Strasse 7, 60438 Frankfurt/M., Germany., Hacker C; Signals GmbH & Co. KG, Graf-von-Stauffenberg-Allee 83, 60438 Frankfurt/M, Germany., Haddad C; Department of Chemistry, Case Western Reserve University, Cleveland, OH 44106, USA., Hähnke M; Signals GmbH & Co. KG, Graf-von-Stauffenberg-Allee 83, 60438 Frankfurt/M, Germany., Hengesbach M; Institute for Organic Chemistry and Chemical Biology, Max-von-Laue-Strasse 7, 60438 Frankfurt/M., Germany., Hiller F; Signals GmbH & Co. KG, Graf-von-Stauffenberg-Allee 83, 60438 Frankfurt/M, Germany., Hohmann KF; Institute for Organic Chemistry and Chemical Biology, Max-von-Laue-Strasse 7, 60438 Frankfurt/M., Germany., Hymon D; Institute for Organic Chemistry and Chemical Biology, Max-von-Laue-Strasse 7, 60438 Frankfurt/M., Germany., de Jesus V; Institute for Organic Chemistry and Chemical Biology, Max-von-Laue-Strasse 7, 60438 Frankfurt/M., Germany., Jonker H; Institute for Organic Chemistry and Chemical Biology, Max-von-Laue-Strasse 7, 60438 Frankfurt/M., Germany., Keller H; Institute for Molecular Biosciences., Knezic B; Institute for Organic Chemistry and Chemical Biology, Max-von-Laue-Strasse 7, 60438 Frankfurt/M., Germany., Landgraf T; Institute for Organic Chemistry and Chemical Biology, Max-von-Laue-Strasse 7, 60438 Frankfurt/M., Germany., Löhr F; Institute of Biophysical Chemistry, Center for Biomolecular Magnetic Resonance (BMRZ), Johann Wolfgang Goethe-University Frankfurt, Max-von-Laue-Strasse 7, 60438 Frankfurt/M., Germany., Luo L; Department of Medical Biochemistry and Biophysics, Karolinska Institute, Biomedicum 9B, Solnavägen 9, 17177 Stockholm, Sweden., Mertinkus KR; Institute for Organic Chemistry and Chemical Biology, Max-von-Laue-Strasse 7, 60438 Frankfurt/M., Germany., Muhs C; Institute for Organic Chemistry and Chemical Biology, Max-von-Laue-Strasse 7, 60438 Frankfurt/M., Germany., Novakovic M; Faculty of Chemistry, Weizmann Institute of Science, 7610001 Rehovot, Israel., Oxenfarth A; Institute for Organic Chemistry and Chemical Biology, Max-von-Laue-Strasse 7, 60438 Frankfurt/M., Germany., Palomino-Schätzlein M; School of Medicine, Catholic University of Valencia, C/Quevedo 2, 46001 Valencia, Spain., Petzold K; Department of Medical Biochemistry and Biophysics, Karolinska Institute, Biomedicum 9B, Solnavägen 9, 17177 Stockholm, Sweden., Peter SA; Department of Biology, Technical University of Darmstadt, Schnittspahnstrasse 10, 64287 Darmstadt, Germany., Pyper DJ; Institute for Organic Chemistry and Chemical Biology, Max-von-Laue-Strasse 7, 60438 Frankfurt/M., Germany., Qureshi NS; Institute for Organic Chemistry and Chemical Biology, Max-von-Laue-Strasse 7, 60438 Frankfurt/M., Germany., Riad M; Department of Medical Biochemistry and Biophysics, Karolinska Institute, Biomedicum 9B, Solnavägen 9, 17177 Stockholm, Sweden., Richter C; Institute for Organic Chemistry and Chemical Biology, Max-von-Laue-Strasse 7, 60438 Frankfurt/M., Germany., Saxena K; Institute for Organic Chemistry and Chemical Biology, Max-von-Laue-Strasse 7, 60438 Frankfurt/M., Germany., Schamber T; Institute for Organic Chemistry and Chemical Biology, Max-von-Laue-Strasse 7, 60438 Frankfurt/M., Germany., Scherf T; Faculty of Chemistry, Weizmann Institute of Science, 7610001 Rehovot, Israel., Schlagnitweit J; Department of Medical Biochemistry and Biophysics, Karolinska Institute, Biomedicum 9B, Solnavägen 9, 17177 Stockholm, Sweden., Schlundt A; Institute for Molecular Biosciences., Schnieders R; Institute for Organic Chemistry and Chemical Biology, Max-von-Laue-Strasse 7, 60438 Frankfurt/M., Germany., Schwalbe H; Institute for Organic Chemistry and Chemical Biology, Max-von-Laue-Strasse 7, 60438 Frankfurt/M., Germany., Simba-Lahuasi A; School of Medicine, Catholic University of Valencia, C/Quevedo 2, 46001 Valencia, Spain., Sreeramulu S; Institute for Organic Chemistry and Chemical Biology, Max-von-Laue-Strasse 7, 60438 Frankfurt/M., Germany., Stirnal E; Institute for Organic Chemistry and Chemical Biology, Max-von-Laue-Strasse 7, 60438 Frankfurt/M., Germany., Sudakov A; Institute for Organic Chemistry and Chemical Biology, Max-von-Laue-Strasse 7, 60438 Frankfurt/M., Germany., Tants JN; Institute for Molecular Biosciences., Tolbert BS; Department of Chemistry, Case Western Reserve University, Cleveland, OH 44106, USA., Vögele J; Institute for Molecular Biosciences., Weiß L; Institute for Molecular Biosciences., Wirmer-Bartoschek J; Institute for Organic Chemistry and Chemical Biology, Max-von-Laue-Strasse 7, 60438 Frankfurt/M., Germany., Wirtz Martin MA; Institute for Organic Chemistry and Chemical Biology, Max-von-Laue-Strasse 7, 60438 Frankfurt/M., Germany., Wöhnert J; Institute for Molecular Biosciences., Zetzsche H; Institute for Organic Chemistry and Chemical Biology, Max-von-Laue-Strasse 7, 60438 Frankfurt/M., Germany.

Publikováno v: Nucleic acids research [Nucleic Acids Res] 2021 Jul 09; Vol. 49 (12), pp. 7204-7205.

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Akademický článek

Allovalency observed by transferred NOE: interactions of sulfated tyrosine residues in the N-terminal segment of CCR5 with the CCL5 chemokine.

Autor: Kessler N; Department of Structural Biology, Weizmann Institute of Science, Rehovot, Israel., Akabayov SR; Department of Structural Biology, Weizmann Institute of Science, Rehovot, Israel., Moseri A; Department of Structural Biology, Weizmann Institute of Science, Rehovot, Israel., Cohen LS; Department of Chemistry and Macromolecular Assembly Institute, College of Staten Island of the City University of New York, Staten Island, NY, USA.; PhD Programs in Biochemistry and Chemistry, The Graduate Center of the City University of New York, New York, NY, USA., Sakhapov D; Department of Structural Biology, Weizmann Institute of Science, Rehovot, Israel., Bolton D; Department of Molecular Biology, New York State Institute for Basic Research in Developmental Disabilities, Office for People with Developmental Disabilities, Staten Island, NY, USA., Fridman B; Department of Chemistry and Macromolecular Assembly Institute, College of Staten Island of the City University of New York, Staten Island, NY, USA., Kay LE; Department of Molecular Genetics, The University of Toronto, Toronto, ON, Canada.; Department of Biochemistry, The University of Toronto, Toronto, ON, Canada.; Department of Chemistry, The University of Toronto, Toronto, ON, Canada.; Program in Molecular Medicine, Hospital for Sick Children, Toronto, ON, Canada., Naider F; Department of Chemistry and Macromolecular Assembly Institute, College of Staten Island of the City University of New York, Staten Island, NY, USA.; PhD Programs in Biochemistry and Chemistry, The Graduate Center of the City University of New York, New York, NY, USA., Anglister J; Department of Structural Biology, Weizmann Institute of Science, Rehovot, Israel.

Publikováno v: The FEBS journal [FEBS J] 2021 Mar; Vol. 288 (5), pp. 1648-1663. Date of Electronic Publication: 2020 Sep 08.

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Akademický článek

Secondary structure determination of conserved SARS-CoV-2 RNA elements by NMR spectroscopy.

Publikováno v: Nucleic acids research [Nucleic Acids Res] 2020 Dec 16; Vol. 48 (22), pp. 12415-12435.

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Akademický článek

The methyl ¹³ C-edited/ ¹³ C-filtered transferred NOE for studying protein interactions with short linear motifs.

Autor: Kumar S; Department of Structural Biology, Weizmann Institute of Science, 76100, Rehovot, Israel., Akabayov SR; Department of Structural Biology, Weizmann Institute of Science, 76100, Rehovot, Israel. sabine-ruth.akabayov@weizmann.ac.il., Kessler N; Department of Structural Biology, Weizmann Institute of Science, 76100, Rehovot, Israel., Cohen LS; Department of Chemistry and Macromolecular Assembly Institute, College of Staten Island of the City University of New York, Staten Island, NY, 10314, USA.; The Graduate Center of the City University of New York, New York, NY, 10016, USA., Solanki J; Department of Chemistry and Macromolecular Assembly Institute, College of Staten Island of the City University of New York, Staten Island, NY, 10314, USA.; The Graduate Center of the City University of New York, New York, NY, 10016, USA., Naider F; Department of Chemistry and Macromolecular Assembly Institute, College of Staten Island of the City University of New York, Staten Island, NY, 10314, USA.; The Graduate Center of the City University of New York, New York, NY, 10016, USA., Kay LE; Department of Molecular Genetics, The University of Toronto, Toronto, ON, M5S1A8, Canada.; Department of Biochemistry, The University of Toronto, Toronto, ON, M5S1A8, Canada.; Department of Chemistry, The University of Toronto, Toronto, ON, M5S1A8, Canada.; Hospital for Sick Children, Program in Molecular Medicine, 555 University Avenue, Toronto, ON, M5G 1X8, Canada., Anglister J; Department of Structural Biology, Weizmann Institute of Science, 76100, Rehovot, Israel. Jacob.Anglister@weizmann.ac.il.

Publikováno v: Journal of biomolecular NMR [J Biomol NMR] 2020 Dec; Vol. 74 (12), pp. 681-693. Date of Electronic Publication: 2020 Sep 30.

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Akademický článek

Discovery of small-molecule inhibitors targeting the ribosomal peptidyl transferase center (PTC) of M. tuberculosis .

Autor: Tam B; Department of Chemistry , Ben-Gurion University of the Negev , Beer-Sheva , Israel . Email: akabayov@bgu.ac.il., Sherf D; Department of Chemistry , Ben-Gurion University of the Negev , Beer-Sheva , Israel . Email: akabayov@bgu.ac.il., Cohen S; Department of Chemistry , Ben-Gurion University of the Negev , Beer-Sheva , Israel . Email: akabayov@bgu.ac.il., Eisdorfer SA; Department of Chemistry , Ben-Gurion University of the Negev , Beer-Sheva , Israel . Email: akabayov@bgu.ac.il., Perez M; Department of Structural Biology , Weizmann Institute of Science , Rehovot , Israell., Soffer A; School of Computer and Electrical Engineering , Ben-Gurion University of the Negev , Israel., Vilenchik D; School of Computer and Electrical Engineering , Ben-Gurion University of the Negev , Israel., Akabayov SR; Department of Structural Biology , Weizmann Institute of Science , Rehovot , Israell., Wagner G; Department of Biological Chemistry and Molecular Pharmacology , Harvard Medical School , Boston , MA , USA., Akabayov B; Department of Chemistry , Ben-Gurion University of the Negev , Beer-Sheva , Israel . Email: akabayov@bgu.ac.il.

Publikováno v: Chemical science [Chem Sci] 2019 Aug 06; Vol. 10 (38), pp. 8764-8767. Date of Electronic Publication: 2019 Aug 06 (Print Publication: 2019).

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Akademický článek

Modulation of RNA primer formation by Mn(II)-substituted T7 DNA primase.

Autor: Ilic S; Department of Chemistry, Ben-Gurion University of the Negev, Beer-Sheva, 8410501, Israel., Akabayov SR; Department of Chemistry, Ben-Gurion University of the Negev, Beer-Sheva, 8410501, Israel., Froimovici R; Department of Communication Systems Engineering, Ben-Gurion University of the Negev, Beer-Sheva, 8410501, Israel., Meiry R; Department of Communication Systems Engineering, Ben-Gurion University of the Negev, Beer-Sheva, 8410501, Israel., Vilenchik D; Department of Communication Systems Engineering, Ben-Gurion University of the Negev, Beer-Sheva, 8410501, Israel., Hernandez A; Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, 240 Longwood Ave., Boston, Massachusetts, 02115, USA., Arthanari H; Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, 240 Longwood Ave., Boston, Massachusetts, 02115, USA., Akabayov B; Department of Chemistry, Ben-Gurion University of the Negev, Beer-Sheva, 8410501, Israel. akabayov@bgu.ac.il.

Publikováno v: Scientific reports [Sci Rep] 2017 Jul 19; Vol. 7 (1), pp. 5797. Date of Electronic Publication: 2017 Jul 19.

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Akademický článek

Identification of DNA primase inhibitors via a combined fragment-based and virtual screening.

Autor: Ilic S; Department of Chemistry, Ben-Gurion University of the Negev, Beer-Sheva, 8410501, Israel., Akabayov SR; Department of Chemistry, Ben-Gurion University of the Negev, Beer-Sheva, 8410501, Israel.; Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, 240 Longwood Ave., Boston, Massachusetts 02115, USA., Arthanari H; Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, 240 Longwood Ave., Boston, Massachusetts 02115, USA., Wagner G; Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, 240 Longwood Ave., Boston, Massachusetts 02115, USA., Richardson CC; Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, 240 Longwood Ave., Boston, Massachusetts 02115, USA., Akabayov B; Department of Chemistry, Ben-Gurion University of the Negev, Beer-Sheva, 8410501, Israel.

Publikováno v: Scientific reports [Sci Rep] 2016 Nov 02; Vol. 6, pp. 36322. Date of Electronic Publication: 2016 Nov 02.

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Akademický článek

Detection of intermolecular transferred NOEs in large protein complexes using asymmetric deuteration: HIV-1 gp120 in complex with a CCR5 peptide.

Autor: Srivastava G; Department of Structural Biology, Weizmann Institute of Science, Rehovot, Israel., Moseri A; Department of Structural Biology, Weizmann Institute of Science, Rehovot, Israel., Kessler N; Department of Structural Biology, Weizmann Institute of Science, Rehovot, Israel., Akabayov SR; Department of Structural Biology, Weizmann Institute of Science, Rehovot, Israel., Arshava B; Department of Chemistry and Macromolecular Assembly Institute, College of Staten Island of the City University of New York, Staten Island, NY, USA.; The Graduate Center of the City University of New York, NY, USA., Naider F; Department of Chemistry and Macromolecular Assembly Institute, College of Staten Island of the City University of New York, Staten Island, NY, USA.; The Graduate Center of the City University of New York, NY, USA., Anglister J; Department of Structural Biology, Weizmann Institute of Science, Rehovot, Israel.

Publikováno v: The FEBS journal [FEBS J] 2016 Nov; Vol. 283 (22), pp. 4084-4096. Date of Electronic Publication: 2016 Oct 23.

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