A Practical Bioinformatics Workflow for Routine Analysis of Bacterial WGS Data

Autor: Aitor Atxaerandio-Landa, Ainhoa Arrieta-Gisasola, Lorena Laorden, Joseba Bikandi, Javier Garaizar, Irati Martinez-Malaxetxebarria, Ilargi Martinez-Ballesteros

Publikováno v: Microorganisms, Vol 10, Iss 12, p 2364 (2022)

The use of whole-genome sequencing (WGS) for bacterial characterisation has increased substantially in the last decade. Its high throughput and decreasing cost have led to significant changes in outbreak investigations and surveillance of a wide vari

Externí odkaz: https://doaj.org/article/6dbfc707275144fba3443b93e17f420d

Apoptosis and autophagy-related gene transcription during ovarian follicular atresia in European hake (Merluccius merluccius)

Autor: Anthony Nzioka, Ainara Valencia, Aitor Atxaerandio-Landa, Oihane Diaz de Cerio, Mohammad Amzad Hossain, Maria Korta, Maren Ortiz-Zarragoitia, Ibon Cancio

Follicular atresia is an energy-saving oocyte resorption process that can allow the survival of female fish when environmental conditions are unfavourable and at the expense of fecundity. This study investigated the transcription levels of apoptosis

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c20f8a5e2d8eb462f0eae2e44d65d7de
http://hdl.handle.net/10810/58887

Genotyping Study of Salmonella 4,[5],12:i:- Monophasic Variant of Serovar Typhimurium and Characterization of the Second-Phase Flagellar Deletion by Whole Genome Sequencing

Autor: Aitor Atxaerandio-Landa, Ilargi Martinez-Ballesteros, María Jesús Grilló, Javier Garaizar, Lorena Laorden, Ainhoa Arrieta-Gisasola, Victoria Garrido, Joseba Bikandi

Publikováno v: Addi: Archivo Digital para la Docencia y la Investigación
Universidad del País Vasco
Addi. Archivo Digital para la Docencia y la Investigación
instname
Microorganisms
Volume 8
Issue 12
Digital.CSIC. Repositorio Institucional del CSIC
Microorganisms, Vol 8, Iss 2049, p 2049 (2020)

After Salmonella Enteritidis and S. Typhimurium, S. 4,[5],12:i:- is the most reported serovar in human clinical cases. During the past 20 years, many tools have been used for its typing and second-phase flagellar deletion characterization. Currently,

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::df527edbf1339bf4276533a292f1c277
http://hdl.handle.net/10810/49648