Making genomic surveillance deliver: A lineage classification and nomenclature system to inform rabies elimination.

Autor: Kathryn Campbell, Robert J Gifford, Joshua Singer, Verity Hill, Aine O'Toole, Andrew Rambaut, Katie Hampson, Kirstyn Brunker

Publikováno v: PLoS Pathogens, Vol 18, Iss 5, p e1010023 (2022)

The availability of pathogen sequence data and use of genomic surveillance is rapidly increasing. Genomic tools and classification systems need updating to reflect this. Here, rabies virus is used as an example to showcase the potential value of upda

Externí odkaz: https://doaj.org/article/8b152bf594a340949453dddbb1a1d493

Early detection of vaccine-derived poliovirus outbreaks using nested PCR and nanopore sequencing in the Democratic Republic of Congo, 2021-2022

Autor: Alexander Shaw, Tresor Kabeya Mampuela, Emmanuel Lokilo Lofiko, Catherine Pratt, Catherine Troman, Erika Bujaki, Aine O'Toole, Joyce Akello, Adrienne Amuri Aziza, Eddy Kinganda Lusamaki, Jean-Claude Makangara Cigolo, Marceline Akonga, Yvonne Lay, Bibiche Nsunda, Bailey White, David Jorgensen, Elisabeth Pukuta, Yogolelo Riziki, Kathleen Rankin, Andrew Rambaut, Steve Ahuka-Mundeke, Jean-Jacques Muyembe, Javier Martin, Nicholas Grassly, Placide Mbala-Kingebeni

Delayed detection of poliovirus outbreaks is a major threat to polio eradication. Direct molecular Detection and Nanopore Sequencing (DDNS) of stool samples shows promise as a faster method to detect and confirm polio cases compared with cell culture

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::34071600a4fe63d8e60fc9fb6f1acfa8
https://doi.org/10.21203/rs.3.rs-2701488/v1

Shotgun metagenomic sequencing of the first case of monkeypox virus in Brazil, 2022

Autor: Ingra Morales Claro, Camila Malta Romano, Darlan da Silva Candido, Evelyn Lepka de Lima, José Angelo Lauletta Lindoso, Mariana Severo Ramundo, Filipe Romero Rebello Moreira, Luiz Alberto Costa Barra, Luciana Marques Sansão Borges, Lucas Alberto Medeiros, Marcia Y. S. Tomishige, Tomas Moutinho, Anderson José Dias da Silva, Camila Cristina Martini Rodrigues, Luiz Cesar Fernandes de Azevedo, Lucy Santos Villas-Boas, Camila Alves Maia da Silva, Thaís Moura Coletti, Erika R. Manuli, Aine O’Toole, Joshua Quick, Nicholas Loman, Andrew Rambaut, Nuno R. Faria, Claudia Figueiredo-Mello, Ester Cerdeira Sabino

Publikováno v: Claro, I M, Romano, C M, Candido, D D S, Lima, E L D, Lindoso, J A L, Ramundo, M S, Moreira, F R R, Barra, L A C, Borges, L M S, Medeiros, L A, Tomishige, M Y S, Moutinho, T, Silva, A J D D, Rodrigues, C C M, Azevedo, L C F D, Villas-Boas, L S, Silva, C A M D, Coletti, T M, Manuli, E R, O'Toole, A, Quick, J, Loman, N, Rambaut, A, Faria, N R, Figueiredo-Mello, C & Sabino, E C 2022, ' Shotgun metagenomic sequencing of the first case of monkeypox virus in Brazil, 2022 ', Revista do Instituto de Medicina Tropical de Sao Paulo, vol. 64 . https://doi.org/10.1590/S1678-9946202264048
Revista do Instituto de Medicina Tropical de São Paulo; Vol. 64 (2022); e48
Revista do Instituto de Medicina Tropical de São Paulo; v. 64 (2022); e48
Revista do Instituto de Medicina Tropical de São Paulo
Instituto de Medicina Tropical (IMT)
instacron:IMT

Monkeypox virus (MPXV), a zoonotic virus endemic to the African continent, has been reported in 33 non-endemic countries since May 2022. We report an almost complete genome of the first confirmed case of MPXV in Brazil. Shotgun metagenomic sequencing

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::0594364a4f61fd5931a97264def5ee6e
https://www.pure.ed.ac.uk/ws/files/285298657/download.pdf