Assessing the hidden diversity underlying consensus sequences of SARS-CoV-2 using VICOS, a novel bioinformatic pipeline for identification of mixed viral populations

Autor: Stephanie Goya, Ezequiel Sosa, Mercedes Nabaes Jodar, Carolina Torres, Guido König, Dolores Acuña, Santiago Ceballos, Ana J Distéfano, Hernán Dopazo, María Dus Santos, Mónica Fass, Darío Fernández Do Porto, Ailen Fernández, Fernando Gallego, María I Gismondi, Ivan Gramundi, Silvina Lusso, Marcelo Martí, Melina Mazzeo, Alicia S. Mistchenko, Marianne Muñoz Hidalgo, Mónica Natale, Cristina Nardi, Julia Ousset, Andrea V Peralta, Carolina Pintos, Andrea F Puebla, Luis Pianciola, Máximo Rivarola, Adrian Turjanski, Laura Valinotto, Pablo A Vera, Jonathan Zaiat, Jeremías Zubrycki, Paula Aulicino, Mariana Viegas

Publikováno v: Virus Research. 325:199035

Coinfection with two SARS-CoV-2 viruses is still a very understudied phenomenon. Although next generation sequencing methods are very sensitive to detect heterogeneous viral populations in a sample, there is no standardized method for their character

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::fec21b84a47e8573e3dbe2369d1c34ed
https://doi.org/10.1016/j.virusres.2022.199035

Cost-Effective Method to Perform SARS-CoV-2 Variant Surveillance: Detection of Alpha, Gamma, Lambda, Delta, Epsilon, and Zeta in Argentina

Autor: Carolina Torres, Laura Mojsiejczuk, Dolores Acuña, Sofía Alexay, Ariel Amadio, Paula Aulicino, Humberto Debat, Fabián Fay, Franco Fernández, Adriana A. Giri, Stephanie Goya, Guido König, Horacio Lucero, Mercedes Nabaes Jodar, Luis Pianciola, Javier A. Sfalcin, Raúl M. Acevedo, Sofía Bengoa Luoni, Elisa M. Bolatti, Bettina Brusés, Marco Cacciabue, Pablo E. Casal, Agustina Cerri, Diego Chouhy, María José Dus Santos, María Florencia Eberhardt, Ailen Fernandez, Paula del Carmen Fernández, Darío Fernández Do Porto, Laura Formichelli, María Inés Gismondi, Matías Irazoqui, Melina Lorenzini Campos, Silvina Lusso, Nathalie Marquez, Marianne Muñoz, Javier Mussin, Mónica Natale, Griselda Oria, María Belén Pisano, Victoria Posner, Andrea Puebla, Viviana Re, Ezequiel Sosa, Gabriela V. Villanova, Jonathan Zaiat, Sebastián Zunino, María Elina Acevedo, Julián Acosta, Cristina Alvarez Lopez, María Laura Álvarez, Patricia Angeleri, Andrés Angelletti, Manuel Arca, Natalia A. Ayala, Gabriela Barbas, Ana Bertone, Agustina Bonnet, Ignacio Bourlot, Victoria Cabassi, Alejandro Castello, Gonzalo Castro, Ana Laura Cavatorta, Carolina Ceriani, Carlos Cimmino, Julián Cipelli, María Colmeiro, Andrés Cordero, Carolina Cristina, Sofia Di Bella, Guillermina Dolcini, Regina Ercole, Yesica Espasandin, Carlos Espul, Andrea Falaschi, Facundo Fernandez Moll, María Delia Foussal, Andrea Gatelli, Sandra Goñi, María Estela Jofré, José Jaramillo, Natalia Labarta, María Agustina Lacaze, Rocio Larreche, Viviana Leiva, Gustavo Levin, Erica Luczak, Marcelo Mandile, Gioia Marino, Carla Massone, Melina Mazzeo, Carla Medina, Belén Monaco, Luciana Montoto, Viviana Mugna, Alejandra Musto, Victoria Nadalich, María Victoria Nieto, Guillermo Ojeda, Andrea C. Piedrabuena, Carolina Pintos, Marcia Pozzati, Marilina Rahhal, Claudia Rechimont, Federico Remes Lenicov, Gabriela Rompato, Vanesa Seery, Leticia Siri, Julieta Spina, Cintia Streitenberger, Ariel Suárez, Jorgelina Suárez, Paula Sujansky, Juan Manuel Talia, Clara Theaux, Guillermo Thomas, Marina Ticeira, Estefanía Tittarelli, Rosana Toro, Osvaldo Uez, María Belén Zaffanella, Cecilia Ziehm, Martin Zubieta

Publikováno v: Frontiers in Medicine, Vol 8 (2021)

SARS-CoV-2 variants with concerning characteristics have emerged since the end of 2020. Surveillance of SARS-CoV-2 variants was performed on a total of 4,851 samples from the capital city and 10 provinces of Argentina, during 51 epidemiological weeks

Externí odkaz: https://doaj.org/article/71cb2e3fb9df4e33826fe8a48313dd69