Zobrazeno 1 - 10
of 783
pro vyhledávání: '"Ahnert, SE"'
Predicting phenotype transition probabilities via conditional algorithmic probability approximations
Peer reviewed: True
Unravelling the structure of genotype-phenotype (GP) maps is an important problem in biology. Recently, arguments inspired by algorithmic information theory (AIT) and Kolmogorov complexity have been invoked to uncover simplic
Unravelling the structure of genotype-phenotype (GP) maps is an important problem in biology. Recently, arguments inspired by algorithmic information theory (AIT) and Kolmogorov complexity have been invoked to uncover simplic
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e612facb68cbc1bb14cebe5755058769
https://doi.org/10.1101/2022.09.21.508902
https://doi.org/10.1101/2022.09.21.508902
The Boltzmann distributions of molecular structures predict likely changes through random mutations.
Autor:
Martin NS; Rudolf Peierls Centre for Theoretical Physics, University of Oxford, Oxford, United Kingdom; Theory of Condensed Matter Group, Cavendish Laboratory, University of Cambridge, Cambridge, United Kingdom; Sainsbury Laboratory, University of Cambridge, Cambridge, United Kingdom. Electronic address: nora.martin@crg.eu., Ahnert SE; Department of Chemical Engineering and Biotechnology, University of Cambridge, Cambridge, United Kingdom; The Alan Turing Institute, London, United Kingdom.
Publikováno v:
Biophysical journal [Biophys J] 2023 Nov 21; Vol. 122 (22), pp. 4467-4475. Date of Electronic Publication: 2023 Oct 29.
The quantification of visual aesthetics and complexity have a long history, the latter previously operationalized via the application of compression algorithms. Here we generalize and extend the compression approach beyond simple complexity measures
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::430da0dd3260b4f3dc0f4f8e63d5537c
Autor:
García-Galindo P; Department of Chemical Engineering and Biotechnology, University of Cambridge, Philippa Fawcett Drive, Cambridge CB3 0AS, UK., Ahnert SE; Department of Chemical Engineering and Biotechnology, University of Cambridge, Philippa Fawcett Drive, Cambridge CB3 0AS, UK.; The Alan Turing Institute, 96 Euston Road, London NW1 2DB, UK., Martin NS; Rudolf Peierls Centre for Theoretical Physics, Beecroft Building, Parks Road, Oxford OX1 3PU, UK.
Publikováno v:
Journal of the Royal Society, Interface [J R Soc Interface] 2023 Aug; Vol. 20 (205), pp. 20230132. Date of Electronic Publication: 2023 Aug 23.
Autor:
Mohanty V; Rudolf Peierls Centre for Theoretical Physics, University of Oxford, Oxford, UK.; Program in Health Sciences and Technology, Massachusetts Institute of Technology, Cambridge, MA, USA.; MD-PhD Program, Harvard Medical School, Boston, MA, USA and Massachusetts Institute of Technology, Cambridge, MA, USA., Greenbury SF; Theory of Condensed Matter Group, Cavendish Laboratory, University of Cambridge, Cambridge, UK.; The Alan Turing Institute, British Library, London, UK., Sarkany T; Wellcome-MRC Cambridge Stem Cell Institute, University of Cambridge, Cambridge, UK., Narayanan S; Department of Electrical Engineering and Computer Science, Massachusetts Institute of Technology, Cambridge, MA, USA., Dingle K; Department of Mathematics and Natural Sciences, Centre for Applied Mathematics and Bioinformatics (CAMB), Gulf University of Science and Technology, Kuwait.; Department of Computing and Mathematical Sciences, California Institute of Technology, Pasadena, CA, USA., Ahnert SE; Theory of Condensed Matter Group, Cavendish Laboratory, University of Cambridge, Cambridge, UK.; Department of Chemical Engineering and Biotechnology, Cavendish Laboratory, University of Cambridge, Cambridge, UK.; The Alan Turing Institute, British Library, London, UK., Louis AA; Rudolf Peierls Centre for Theoretical Physics, University of Oxford, Oxford, UK.
Publikováno v:
Journal of the Royal Society, Interface [J R Soc Interface] 2023 Jul; Vol. 20 (204), pp. 20230169. Date of Electronic Publication: 2023 Jul 26.
Autor:
Dingle K; Department of Chemical Engineering and Biotechnology, Cambridge University, Cambridge CB2 1TN, UK.; Department of Computing and Mathematical Sciences, California Institute of Technology, Pasadena, CA 91125, USA.; Department of Mathematics and Natural Sciences, Centre for Applied Mathematics and Bioinformatics (CAMB), Gulf University for Science and Technology, 32093, Kuwait., Novev JK; Department of Chemical Engineering and Biotechnology, Cambridge University, Cambridge CB2 1TN, UK., Ahnert SE; Department of Chemical Engineering and Biotechnology, Cambridge University, Cambridge CB2 1TN, UK., Louis AA; Department of Physics, Rudolf Peierls Centre for Theoretical Physics, Oxford University, Oxford OX1 2JD, UK.
Publikováno v:
Journal of the Royal Society, Interface [J R Soc Interface] 2022 Dec; Vol. 19 (197), pp. 20220694. Date of Electronic Publication: 2022 Dec 14.
Autor:
Greenbury SF; Theory of Condensed Matter Group, Cavendish Laboratory, University of Cambridge, Cambridge, UK. sgreenbury@turing.ac.uk.; The Alan Turing Institute, British Library, London, UK. sgreenbury@turing.ac.uk., Louis AA; Rudolf Peierls Centre for Theoretical Physics, University of Oxford, Oxford, UK. ard.louis@physics.ox.ac.uk., Ahnert SE; The Alan Turing Institute, British Library, London, UK. sea31@cam.ac.uk.; Department of Chemical Engineering and Biotechnology, University of Cambridge, Cambridge, UK. sea31@cam.ac.uk.
Publikováno v:
Nature ecology & evolution [Nat Ecol Evol] 2022 Nov; Vol. 6 (11), pp. 1742-1752. Date of Electronic Publication: 2022 Sep 29.
As the number of solved protein structures increases, the opportunities for meta-analysis of this dataset increase too. Protein structures are known to be formed of domains; structural and functional subunits that are often repeated across sets of pr
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::822977c4a6ae8af05a10f0ad9f1b1e8d
https://www.repository.cam.ac.uk/handle/1810/292541
https://www.repository.cam.ac.uk/handle/1810/292541
Autor:
Manrubia S; Department of Systems Biology, Centro Nacional de Biotecnología (CSIC), Madrid, Spain; Grupo Interdisciplinar de Sistemas Complejos (GISC), Madrid, Spain. Electronic address: smanrubia@cnb.csic.es., Cuesta JA; Grupo Interdisciplinar de Sistemas Complejos (GISC), Madrid, Spain; Departamento de Matemáticas, Universidad Carlos III de Madrid, Leganés, Spain; Instituto de Biocomputación y Física de Sistemas Complejos (BiFi), Universidad de Zaragoza, Spain; UC3M-Santander Big Data Institute (IBiDat), Getafe, Madrid, Spain., Aguirre J; Grupo Interdisciplinar de Sistemas Complejos (GISC), Madrid, Spain; Centro de Astrobiología, CSIC-INTA, ctra. de Ajalvir km 4, 28850 Torrejón de Ardoz, Madrid, Spain., Ahnert SE; Theory of Condensed Matter Group, Cavendish Laboratory, University of Cambridge, Cambridge, UK; Sainsbury Laboratory, University of Cambridge, Cambridge, UK., Altenberg L; University of Hawai'i at Manoa, HI, USA., Cano AV; Institute of Integrative Biology, ETH Zurich, Zurich, Switzerland; Swiss Institute of Bioinformatics, Lausanne, Switzerland., Catalán P; Grupo Interdisciplinar de Sistemas Complejos (GISC), Madrid, Spain; Departamento de Matemáticas, Universidad Carlos III de Madrid, Leganés, Spain., Diaz-Uriarte R; Department of Biochemistry, Universidad Autónoma de Madrid, Madrid, Spain; Instituto de Investigaciones Biomédicas 'Alberto Sols' (UAM-CSIC), Madrid, Spain., Elena SF; Instituto de Biología Integrativa de Sistemas, I(2)SysBio (CSIC-UV), València, Spain; The Santa Fe Institute, Santa Fe, NM, USA., García-Martín JA; Centro Nacional de Biotecnología (CSIC), Madrid, Spain., Hogeweg P; Theoretical Biology and Bioinformatics Group, Utrecht University, the Netherlands., Khatri BS; The Francis Crick Institute, London, UK; Department of Life Sciences, Imperial College London, London, UK., Krug J; Institute for Biological Physics, University of Cologne, Köln, Germany., Louis AA; Rudolf Peierls Centre for Theoretical Physics, University of Oxford, Oxford, UK., Martin NS; Theory of Condensed Matter Group, Cavendish Laboratory, University of Cambridge, Cambridge, UK; Sainsbury Laboratory, University of Cambridge, Cambridge, UK., Payne JL; Institute of Integrative Biology, ETH Zurich, Zurich, Switzerland; Swiss Institute of Bioinformatics, Lausanne, Switzerland., Tarnowski MJ; School of Biological Sciences, University of Bristol, Bristol, UK., Weiß M; Theory of Condensed Matter Group, Cavendish Laboratory, University of Cambridge, Cambridge, UK; Sainsbury Laboratory, University of Cambridge, Cambridge, UK.
Publikováno v:
Physics of life reviews [Phys Life Rev] 2022 Sep; Vol. 42, pp. 19-24. Date of Electronic Publication: 2022 May 23.