Global disparities in SARS-CoV-2 genomic surveillance

Autor: Brito, AF, Semonva, E, Dudas, G, Hassler, GW, Kalinich, CC, Kraemer, MUG, Ho, J, Houriyah, T, Githinji, G, Agoti, CN, Matkin, LE, Whittaker, C, Bulgarian SARS-CoV-2 sequencing group, Communicable Diseases Genomics Network (Australia and New Zealand), COVID-19 Impact Project, Danish Covid-19 Genome Consortium, Fiocruz COVID-19 Genomic Surveillance Network, GISAID core curation team, Network for Genomic Surveillance in South Africa (NGS-SA), Swiss SARS-CoV-2 Sequencing Consortium, Howden, BP, Sintchenko, V, Zuckerman, NS, Mor, O, Blankenship, HM, De Oliveira, T, Lin, RTP, Siqueira, MM, Resende, PC, Vasconcelos, TR, Spilki, FR, Aguiar, RS, Alexiev, I, Ivanov, IN, Philipova, I, Carrington, CVF, Sahadeo, NSD, Branda, B, Gurry, C, Maurer-Stroh, S, Naidoo, D, Von Eije, KJ, Perkins, MD, Von Kerkhove, M, Hill, SC, Sabino, EC, Pybus, OG, Dye, C, Bhatt, S, Flaxman, S, Suchard, MA, Grubaugh, ND, Baele, G, Faria, NM

Publikováno v: Nature communications, vol 13, iss 1

Genomic sequencing is essential to track the evolution and spread of SARS-CoV-2, optimize molecular tests, treatments, vaccines, and guide public health responses. To investigate the global SARS-CoV-2 genomic surveillance, we used sequences shared vi

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=dedup_wf_001::64faa4c54efc36dba6c20d664da29358
https://escholarship.org/uc/item/3z0943j9

Sero-surveillance for IgG to SARS-CoV-2 at antenatal care clinics in three Kenyan referral hospitals: Repeated cross-sectional surveys 2020-21

Autor: Lucinde, RK, Mugo, D, Bottomley, C, Karani, A, Gardiner, E, Aziza, R, Gitonga, JN, Karanja, H, Nyagwange, J, Tuju, J, Wanjiku, P, Nzomo, E, Kamuri, E, Thuranira, K, Agunda, S, Nyutu, G, Etyang, AO, Adetifa, IMO, Kagucia, E, Uyoga, S, Otiende, M, Otieno, E, Ndwiga, L, Agoti, CN, Aman, RA, Mwangangi, M, Amoth, P, Kasera, K, Nyaguara, A, Ng'ang'a, W, Ochola, LB, Namdala, E, Gaunya, O, Okuku, R, Barasa, E, Bejon, P, Tsofa, B, Ochola-Oyier, LI, Warimwe, GM, Agweyu, A, Scott, JAG, Gallagher, KE

Publikováno v: PloS one. 17(10)

Introduction The high proportion of SARS-CoV-2 infections that have remained undetected presents a challenge to tracking the progress of the pandemic and estimating the extent of population immunity. Methods We used residual blood samples from women

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6d70933cf16d08193f1dcc748900bcb9
https://pubmed.ncbi.nlm.nih.gov/36240176

Epidemiology of COVID-19 infections on routine polymerase chain reaction (PCR) and serology testing in Coastal Kenya

Autor: Nyagwange, J, Ndwiga, L, Muteru, K, Wamae, K, Tuju, J, Testing Team, C, Kutima, B, Gitonga, J, Karanja, H, Mugo, D, Kasera, K, Amoth, P, Murunga, N, Babu, L, Otieno, E, Githinji, G, Nokes, DJ, Tsofa, B, Orindi, B, Barasa, E, Warimwe, G, Agoti, CN, Bejon, P, Ochola-Oyier, LI

Publikováno v: Wellcome Open Research. 7:69

Background: There are limited studies in Africa describing the epidemiology, clinical characteristics and serostatus of individuals tested for severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infection. We tested routine samples from the

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::680403132e80add080357db858a799ad
https://doi.org/10.12688/wellcomeopenres.17661.1

A33 Respiratory syncytial virus group B evolutionary trends in the attachment (G) glycoprotein in Kilifi, Kenya, 2003–2015

Autor: Everlyn Kamau, Graham F. Medley, James Nokes D, Agoti Cn, Patricia A. Cane, Clement Lewa

Publikováno v: Virus Evolution

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::160aac1dd4d7b24755c466af56a8be62
https://doi.org/10.1093/ve/vey010.032

Spatio-temporal distribution of rhinovirus types in Kenya: a retrospective analysis, 2014.

Autor: Morobe JM; Epidemiology and Demography Department, KEMRI-Wellcome Trust Research Programme, Centre for Geographic Medicine Research - Coast, Kilifi, Kenya. jmwita@kemri-wellcome.org., Kamau E; Nuffield Department of Medicine, University of Oxford, Oxford, UK., Luka MM; Epidemiology and Demography Department, KEMRI-Wellcome Trust Research Programme, Centre for Geographic Medicine Research - Coast, Kilifi, Kenya., Murunga N; Epidemiology and Demography Department, KEMRI-Wellcome Trust Research Programme, Centre for Geographic Medicine Research - Coast, Kilifi, Kenya., Lewa C; Epidemiology and Demography Department, KEMRI-Wellcome Trust Research Programme, Centre for Geographic Medicine Research - Coast, Kilifi, Kenya., Mutunga M; Epidemiology and Demography Department, KEMRI-Wellcome Trust Research Programme, Centre for Geographic Medicine Research - Coast, Kilifi, Kenya., Bigogo G; KEMRI- Centre for Global Health Research, Kisumu, Kenya., Otieno N; KEMRI- Centre for Global Health Research, Kisumu, Kenya., Nyawanda B; KEMRI- Centre for Global Health Research, Kisumu, Kenya., Onyango C; Division of Global Health Protection, U.S Centers for Disease Control and Prevention (CDC), Centers for Global Health, Nairobi, Kenya., Nokes DJ; Epidemiology and Demography Department, KEMRI-Wellcome Trust Research Programme, Centre for Geographic Medicine Research - Coast, Kilifi, Kenya.; School of Life Sciences, Zeeman Institute for Systems Biology and Infectious Disease Epidemiology Research (SBIDER), University of Warwick, Coventry, UK., Agoti CN; Epidemiology and Demography Department, KEMRI-Wellcome Trust Research Programme, Centre for Geographic Medicine Research - Coast, Kilifi, Kenya.; Department of Public Health, Pwani University, Kilifi, Kenya., Munywoki PK; Epidemiology and Demography Department, KEMRI-Wellcome Trust Research Programme, Centre for Geographic Medicine Research - Coast, Kilifi, Kenya.; Division of Global Health Protection, U.S Centers for Disease Control and Prevention (CDC), Centers for Global Health, Nairobi, Kenya.

Publikováno v: Scientific reports [Sci Rep] 2024 Sep 27; Vol. 14 (1), pp. 22298. Date of Electronic Publication: 2024 Sep 27.