Growth of Escherichia coli MG1655 on LB medium: determining metabolic strategy with transcriptional microarrays

Autor: Agnes Jancso Radek, Dmitry Baev, John W. Campbell, Mark V. Baev

Publikováno v: Applied Microbiology and Biotechnology. 71:323-328

Expression profiles of genes related to stress responses, substrate assimilation, acetate metabolism, and biosynthesis were obtained by monitoring growth of Escherichia coli MG1655 in Luria-Bertani (LB) medium with transcriptional microarrays. Superi

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::af7bb7a0aaf9303e66c66624165386ef
https://doi.org/10.1007/s00253-006-0392-8

Living with Genome Instability: the Adaptation of Phytoplasmas to Diverse Environments of Their Insect and Plant Hosts

Autor: Xiaodong Bai, John W. Campbell, Alla Lapidus, Theresa L. Walunas, Adam D. Ewing, Jianhua Zhang, Sally A. Miller, Agnes Jancso Radek, Dmitriy V. Shevchenko, Kiryl Tsukerman, Saskia A. Hogenhout

Publikováno v: Bai, Xiaodong; Zhang, Jianhua; Ewing, Adam; Miller, Sally A.; Radek, Agnes; Shevchenko, Dimitriy; et al.(2006). Living with genome instability: the adaptation of phytoplasmas to diverse environments of their insect and plant hosts. Lawrence Berkeley National Laboratory. Lawrence Berkeley National Laboratory: Lawrence Berkeley National Laboratory. Retrieved from: http://www.escholarship.org/uc/item/0h4459px

Phytoplasmas (“ Candidatus Phytoplasma,” class Mollicutes ) cause disease in hundreds of economically important plants and are obligately transmitted by sap-feeding insects of the order Hemiptera, mainly leafhoppers and psyllids. The 706,569-bp c

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::2722ac30d7611dfa03dadb7f5a86f433
https://doi.org/10.1128/jb.188.10.3682-3696.2006

Sry-Directed Sex Reversal in Transgenic Mice Is Robust with Respect to Enhanced DNA Bending: Comparison of Human and Murine HMG Boxes

Autor: Michael A. Weiss, Fashun Jiang, Tatiana Nikolskaya, Agnes Jancso-Radek, Elisha Haas, Varda Ittah, Rupinder Singh, Nelson B. Phillips

Publikováno v: Biochemistry. 43:7066-7081

The testis-determining factor SRY contains an HMG box DNA-bending domain. Human and murine factors (hSRY and mSRY, respectively) exhibit marked sequence divergence and are reported to differ markedly in DNA bending properties. Surprisingly, the combi

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::284627041794718b2383f9636796ca2b
https://doi.org/10.1021/bi049920a

Growth of Escherichia coli MG1655 on LB medium: monitoring utilization of sugars, alcohols, and organic acids with transcriptional microarrays

Autor: Mark V. Baev, John W. Campbell, Dmitry Baev, Agnes Jancso Radek

Publikováno v: Applied microbiology and biotechnology. 71(3)

Microorganisms respond to environmental changes by reprogramming their metabolism primarily through altered patterns of gene expression. DNA microarrays provide a tool for exploiting microorganisms as living sensors of their environment. The potentia

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::35ae6591f4f09fe0d88a0bde23d37979
https://pubmed.ncbi.nlm.nih.gov/16628448

SRYand architectural gene regulation: the kinetic stability of a bent protein-DNA complex can regulate its transcriptional potency

Autor: Lukasz Milos, Ging Chan, Nobuyuki Morikawa, Chin Yen King, Agnes Jancso-Radek, Francis Poulat, Wei Zhang, Christopher M. Haqq, Michael A. Weiss, Nelson B. Phillips, Patricia K. Donahoe, James T. Radek, Etsuji Ukiyama, Biaoru Li

Publikováno v: Molecular endocrinology (Baltimore, Md.). 15(3)

Protein-directed DNA bending is proposed to regulate assembly of higher-order DNA-multiprotein complexes (enhanceosomes and repressosomes). Because transcriptional initiation is a nonequilibrium process, gene expression may be modulated by the lifeti

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::72267ef78a4514c3d9df8afaf38decf9
https://pubmed.ncbi.nlm.nih.gov/11222738