Cell shape affects bacterial colony growth under physical confinement.

Autor: Sreepadmanabh M; National Centre for Biological Sciences, Tata Institute of Fundamental Research, Bangalore, India., Ganesh M; National Centre for Biological Sciences, Tata Institute of Fundamental Research, Bangalore, India.; Indian Institute of Science Education and Research, Mohali, India., Sanjenbam P; National Centre for Biological Sciences, Tata Institute of Fundamental Research, Bangalore, India., Kurzthaler C; Max Planck Institute for the Physics of Complex Systems, Dresden, Germany.; Center for Systems Biology Dresden, Dresden, Germany.; Physics of Life, TU Dresden, Dresden, Germany., Agashe D; National Centre for Biological Sciences, Tata Institute of Fundamental Research, Bangalore, India., Bhattacharjee T; National Centre for Biological Sciences, Tata Institute of Fundamental Research, Bangalore, India. tapa@ncbs.res.in.

Publikováno v: Nature communications [Nat Commun] 2024 Nov 08; Vol. 15 (1), pp. 9561. Date of Electronic Publication: 2024 Nov 08.

Mutational Signatures in Wild Type Escherichia coli Strains Reveal Predominance of DNA Polymerase Errors.

Autor: Garushyants SK; A.A. Kharkevich Institute for Information Transmission Problems, RAS, Moscow, Russia., Sane M; National Centre for Biological Sciences, Bengaluru, India., Selifanova MV; Faculty of Bioengineering and Bioinformatics, M.V. Lomonosov Moscow State University, Moscow, Russia., Agashe D; National Centre for Biological Sciences, Bengaluru, India., Bazykin GA; A.A. Kharkevich Institute for Information Transmission Problems, RAS, Moscow, Russia., Gelfand MS; A.A. Kharkevich Institute for Information Transmission Problems, RAS, Moscow, Russia.; Center for Molecular and Cellular Biology, Skolkovo Institute of Science and Technology (Skoltech), Moscow, Russia.

Publikováno v: Genome biology and evolution [Genome Biol Evol] 2024 Apr 02; Vol. 16 (4).

Shifts in mutation spectra enhance access to beneficial mutations.

Autor: Sane M; National Centre for Biological Sciences, Tata Institute of Fundamental Research, Bengaluru 560065, India., Diwan GD; National Centre for Biological Sciences, Tata Institute of Fundamental Research, Bengaluru 560065, India.; Bioquant, University of Heidelberg, 69120 Heidelberg, Germany.; Heidelberg University Biochemistry Center (BZH), 69120 Heidelberg, Germany., Bhat BA; National Centre for Biological Sciences, Tata Institute of Fundamental Research, Bengaluru 560065, India.; Undergraduate Programme, Indian Institute of Science, Bengaluru 560012, India., Wahl LM; Mathematics, Western University, London, ON, N6A 5B7, Canada., Agashe D; National Centre for Biological Sciences, Tata Institute of Fundamental Research, Bengaluru 560065, India.

Publikováno v: Proceedings of the National Academy of Sciences of the United States of America [Proc Natl Acad Sci U S A] 2023 May 30; Vol. 120 (22), pp. e2207355120. Date of Electronic Publication: 2023 May 22.

Fitness landscapes reveal context-dependent benefits of oviposition behavior.

Autor: Ravi Kumar V; National Centre for Biological Sciences, Tata Institute of Fundamental Research, Bangalore, India.; Current affiliation: Biology Centre, Czech Academy of Sciences, Czech Republic., Agavekar G; National Centre for Biological Sciences, Tata Institute of Fundamental Research, Bangalore, India.; Current affiliation: Okinawa Institute of Science and Technology (OIST), Japan., Agashe D; National Centre for Biological Sciences, Tata Institute of Fundamental Research, Bangalore, India.

Publikováno v: Evolution; international journal of organic evolution [Evolution] 2023 Feb 04; Vol. 77 (2), pp. 550-561.

Towards evolutionary predictions: Current promises and challenges.

Autor: Wortel MT; Swammerdam Institute for Life Sciences University of Amsterdam Amsterdam The Netherlands., Agashe D; National Centre for Biological Sciences Bangalore India., Bailey SF; Clarkson University Potsdam New York USA., Bank C; Institute of Ecology and Evolution University of Bern Bern Switzerland.; Swiss Institute of Bioinformatics Lausanne Switzerland.; Gulbenkian Science Institute Oeiras Portugal., Bisschop K; Institute for Biodiversity and Ecosystem Dynamics University of Amsterdam Amsterdam The Netherlands.; Origins Center Groningen The Netherlands.; Laboratory of Aquatic Biology, KU Leuven Kulak Kortrijk Belgium., Blankers T; Institute for Biodiversity and Ecosystem Dynamics University of Amsterdam Amsterdam The Netherlands.; Origins Center Groningen The Netherlands., Cairns J; University of Helsinki Helsinki Finland., Colizzi ES; Origins Center Groningen The Netherlands.; Mathematical Institute Leiden University Leiden The Netherlands., Cusseddu D; Instituto Gulbenkian de Ciência Oeiras Portugal., Desai MM; Harvard University Cambridge Massachusetts USA., van Dijk B; Max Planck Institute for Evolutionary Biology Plön Germany., Egas M; Institute for Biodiversity and Ecosystem Dynamics University of Amsterdam Amsterdam The Netherlands., Ellers J; Department of Ecological Science Vrije Universiteit Amsterdam Amsterdam The Netherlands., Groot AT; Institute for Biodiversity and Ecosystem Dynamics University of Amsterdam Amsterdam The Netherlands., Heckel DG; Max Planck Institute for Chemical Ecology Jena Germany., Johnson ML; Netherlands Institute of Ecology (NIOO-KNAW) Wageningen The Netherlands., Kraaijeveld K; Leiden Centre for Applied Bioscience University of Applied Sciences Leiden Leiden The Netherlands., Krug J; Institute for Biological Physics University of Cologne Cologne Germany., Laan L; Department of Bionanoscience, Kavli Institute of Nanoscience TU Delft Delft The Netherlands., Lässig M; Institute for Biological Physics University of Cologne Cologne Germany., Lind PA; Department Molecular Biology Umeå University Umeå Sweden., Meijer J; Theoretical Biology and Bioinformatics, Department of Biology Utrecht University Utrecht The Netherlands., Noble LM; Institute de Biologie, École Normale Supérieure, CNRS, Inserm Paris France., Okasha S; University of Bristol Bristol UK., Rainey PB; Department of Microbial Population Biology Max Planck Institute for Evolutionary Biology Plön Germany.; Laboratoire Biophysique et Évolution, CBI, ESPCI Paris, Université PSL, CNRS Paris France., Rozen DE; Institute of Biology, Leiden University Leiden The Netherlands., Shitut S; Origins Center Groningen The Netherlands.; Institute of Biology, Leiden University Leiden The Netherlands., Tans SJ; AMOLF Amsterdam The Netherlands., Tenaillon O; Université Paris Cité, IAME, UMR 1137, INSERM Paris France., Teotónio H; Institut de Biologie de l'Ecole Normale Supérieure Paris France., de Visser JAGM; Laboratory of Genetics Wageningen University & Research Wageningen The Netherlands., Visser ME; Department of Animal Ecology Netherlands Institute of Ecology (NIOO-KNAW) Wageningen The Netherlands., Vroomans RMA; Origins Center Groningen The Netherlands.; Informatics Institute University of Amsterdam Amsterdam The Netherlands., Werner GDA; Department of Zoology University of Oxford Oxford UK., Wertheim B; Groningen Institute for Evolutionary Life Sciences University of Groningen Groningen The Netherlands., Pennings PS; San Francisco State University San Francisco California USA.

Publikováno v: Evolutionary applications [Evol Appl] 2022 Dec 09; Vol. 16 (1), pp. 3-21. Date of Electronic Publication: 2022 Dec 09 (Print Publication: 2023).