Annotating unknown species of urban microorganisms on a global scale unveils novel functional diversity and local environment association.

Autor: Wu J; Center for Bioinformatics and Computational Biology, and the Institute of Biomedical Sciences, School of Life Sciences, East China Normal University, Shanghai, 200241, China., Danko D; Weill Cornell Medicine, USA; The Bin Talal Bin Abdulaziz Alsaud Institute for Computational Biomedicine, USA., Afshinnekoo E; Weill Cornell Medicine, USA; The Bin Talal Bin Abdulaziz Alsaud Institute for Computational Biomedicine, USA., Bezdan D; Weill Cornell Medicine, USA; The Bin Talal Bin Abdulaziz Alsaud Institute for Computational Biomedicine, USA., Bhattacharyya M; Machine Intelligence Unit, Indian Statistical Institute, Kolkata, India; Centre for Artificial Intelligence and Machine Learning, Indian Statistical Institute, Kolkata, India., Castro-Nallar E; Universidad Andrés Bello, Center for Bioinformatics and Integrative Biology, Facultad de Ciencias de la Vida, Argentina., Chmielarczyk A; Jagiellonian University, Faculty of Medicine, Department of Microbiology, Poland., Hazrin-Chong NH; Department of Biological Sciences and Biotechnology, Faculty of Science and Technology, Universiti Kebangsaan Malaysia, 43600, UKM Bangi, Selangor, Malaysia., Deng Y; University of Hawaii, John A. Burns School of Mecidine, USA., Dias-Neto E; Medical Genomics Group, A.C. Camargo Cancer Center and LIM-27 Faculdade de Medicina, USP, São Paulo, Brazil., Frolova A; Institute of Molecular Biology and Genetics of National Academy of Science of Ukraine, Ukraine., Mason-Buck G; Department of Analytical, Environmental and Forensic Sciences, King's College London, UK., Iraola G; Microbial Genomics Laboratory, Institut Pasteur de Montevideo, Uruguay; Center for Integrative Biology, Universidad Mayor, Santiago de Chile, Chile; Wellcome Sanger Institute, Hinxton, United Kingdom., Jang S; Institut Pasteur Korea, South Korea., Łabaj P; Małopolska Centre of Biotechnology, Jagiellonian University, Poland., Lee PKH; School of Energy and Environment, City University of Hong Kong, Hong Kong SAR, China., Nieto-Caballero M; University of Colorado at Boulder, Civil, Environmental and Architectural Department, Boulder, 80303, USA., Osuolale OO; Applied Environmental Metagenomics and Infectious Diseases Research (AEMIDR), Department of Biological Sciences, Elizade University, Nigeria., Ouzounis CA; BCPL-CPERI, Centre for Research & Technology Hellas, Thessalonica, GR, 57001, Greece., Perlin MH; Department of Biology, Program on Disease Evolution, University of Louisville, Louisville, KY, 40292, USA., Prithiviraj B; Reckitt Health, Montvale, NJ, USA; Dept. of Biology, City University of New York, Brooklyn, 11210, NY, USA., Rascovan N; Aix-Marseille Université, IRD, AP-HM, IHU Méditerranée Infection, France., Różańska A; Jagiellonian University, Faculty of Medicine, Department of Microbiology, Poland., Schriml LM; University of Maryland School of Medicine, Institute for Genome Sciences, USA., Semmler T; Robert Koch Institute Berlin, Germany., Suzuki H; Faculty of Environment and Information Studies, Keio University, Fujisawa, Kanagawa, Japan., Ugalde JA; Millennium Initiative for Collaborative Research on Bacterial Resistance, Germany., Young B; Weill Cornell Medicine, USA; The Bin Talal Bin Abdulaziz Alsaud Institute for Computational Biomedicine, USA., Werner J; High Performance and Cloud Computing Group, Zentrum für Datenverarbeitung (ZDV), Eberhard Karls University of Tübingen, Wächterstraße 76, 72074, Tübingen, Germany., Zambrano MM; Corporación Corpogen Research Center, Bogotá, Colombia., Zhao Y; Biological Targeting Diagnosis and Therapy Research Center, Guangxi Medical University, Nanning, 530021, China., Mason C; Weill Cornell Medicine, USA; The Bin Talal Bin Abdulaziz Alsaud Institute for Computational Biomedicine, USA., Shi T; Center for Bioinformatics and Computational Biology, and the Institute of Biomedical Sciences, School of Life Sciences, East China Normal University, Shanghai, 200241, China; Beijing Advanced Innovation Center for Big Data-Based Precision Medicine, Beihang University & Capital Medical University, Beijing, 100083, China. Electronic address: tieliushi@yahoo.com.

Publikováno v: Environmental research [Environ Res] 2022 May 01; Vol. 207, pp. 112183. Date of Electronic Publication: 2021 Oct 09.

The metagenomics and metadesign of the subways and Urban biomes (MetaSUB) international consortium inaugural meeting report

Autor: Afshinnekoo, E, Ahsanuddin, S, Ghedin, E, Read, T, Fraser, C, Dudley, J, Bowler, C, Mason, CE, Chernomoretz, A, Stolovitzky, G, Łabaj, PP, Graf, AB, Darling, A, Burke, C, Noushmehr, H, Dias-Neto, E, Guo, Y, Xie, Z, Lee, PKH, Shi, L, Ruiz-Perez, CA, Zambrano, MM, Siam, R, Ouf, A, Richard, H, Lafontaine, I, Wieler, LH, Semmler, T, Prithiviraj, B, Nedunuri, N, Mehr, S, Banihashemi, K, Lista, F, Anselmo, A, Suzuki, H, Kuroda, M, Yamashita, R, Sato, Y, Kaminuma, E, Aranda, CMA, Martinez, J, Dada, C, Dybwad, M, Oliveira, M, Schuster, S, Siwo, GH, Jang, S, Seo, SC, Hwang, SH, Ossowski, S, Bezdan, D, Chaker, S, Chatziefthimiou, AD, Udekwu, K, Liungdahl, P, Sezerman, U, Meydan, C, Elhaik, E, Gonnet, G, Schriml, LM, Mongodin, E, Huttenhower, C, Gilbert, J, Eisen, J, Hirschberg, D, Hernandez, M, McGrath, K, McGrath, L, Gray, A, Osuolale, O, Segata, N, Fillo, S, Iraola, G, Zhou, Y, Chang, Y, Li, Y, Zhend, Y, Hou, W, Ramirez, A, Cepeda, M, Desnues, C, Rascovan, N, Baron, C, Nagarajan, N, Ercolini, D, Menary, W, Tighe, S, Donia, M, Levy, S, Benito, J, Jones, A, Kasarskis, A, Maritz, J, Jorgensen, E, Neches, R, Livelli, T, Barnetche, JM, Pasolli, E, Greenfield, N, Hasan, N

© 2016 The MetaSUB International Consortium. The Metagenomics and Metadesign of the Subways and Urban Biomes (MetaSUB) International Consortium is a novel, interdisciplinary initiative comprised of experts across many fields, including genomics, dat

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=od_______363::2e14c2d1ea497d3d0e8ccd347302bc1d
https://hdl.handle.net/10453/62172

Shotgun transcriptome, spatial omics, and isothermal profiling of SARS-CoV-2 infection reveals unique host responses, viral diversification, and drug interactions.

Autor: Butler D; Department of Physiology and Biophysics, Weill Cornell Medicine, New York, NY, USA., Mozsary C; Department of Physiology and Biophysics, Weill Cornell Medicine, New York, NY, USA., Meydan C; Department of Physiology and Biophysics, Weill Cornell Medicine, New York, NY, USA.; The HRH Prince Alwaleed Bin Talal Bin Abdulaziz Alsaud Institute for Computational Biomedicine, Weill Cornell Medicine, New York, NY, USA.; WorldQuant Initiative for Quantitative Prediction, Weill Cornell Medicine, New York, NY, USA., Foox J; Department of Physiology and Biophysics, Weill Cornell Medicine, New York, NY, USA.; The HRH Prince Alwaleed Bin Talal Bin Abdulaziz Alsaud Institute for Computational Biomedicine, Weill Cornell Medicine, New York, NY, USA., Rosiene J; New York Genome Center, New York, NY, USA.; Department of Pathology and Laboratory Medicine, Weill Cornell Medicine, New York, NY, USA., Shaiber A; New York Genome Center, New York, NY, USA.; Department of Pathology and Laboratory Medicine, Weill Cornell Medicine, New York, NY, USA.; Englander Institute for Precision Medicine and the Meyer Cancer Center, Weill Cornell Medicine, New York, NY, USA., Danko D; Department of Physiology and Biophysics, Weill Cornell Medicine, New York, NY, USA., Afshinnekoo E; Department of Physiology and Biophysics, Weill Cornell Medicine, New York, NY, USA.; The HRH Prince Alwaleed Bin Talal Bin Abdulaziz Alsaud Institute for Computational Biomedicine, Weill Cornell Medicine, New York, NY, USA.; WorldQuant Initiative for Quantitative Prediction, Weill Cornell Medicine, New York, NY, USA., MacKay M; Department of Physiology and Biophysics, Weill Cornell Medicine, New York, NY, USA., Sedlazeck FJ; Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, USA., Ivanov NA; Department of Physiology and Biophysics, Weill Cornell Medicine, New York, NY, USA.; The HRH Prince Alwaleed Bin Talal Bin Abdulaziz Alsaud Institute for Computational Biomedicine, Weill Cornell Medicine, New York, NY, USA.; Clinical & Translational Science Center, Weill Cornell Medicine, New York, NY, USA., Sierra M; Department of Physiology and Biophysics, Weill Cornell Medicine, New York, NY, USA.; The HRH Prince Alwaleed Bin Talal Bin Abdulaziz Alsaud Institute for Computational Biomedicine, Weill Cornell Medicine, New York, NY, USA., Pohle D; Institute of Medical Virology and Epidemiology of Viral Diseases, University Hospital Tuebingen, Tuebingen, Germany., Zietz M; Department of Biomedical Informatics, Department of Systems Biology, Department of Medicine, Institute for Genomic Medicine, Columbia University, Columbia, NY, USA., Gisladottir U; Department of Biomedical Informatics, Department of Systems Biology, Department of Medicine, Institute for Genomic Medicine, Columbia University, Columbia, NY, USA., Ramlall V; Department of Biomedical Informatics, Department of Systems Biology, Department of Medicine, Institute for Genomic Medicine, Columbia University, Columbia, NY, USA.; Department of Cellular, Molecular Physiology & Biophysics, Columbia University, Columbia, NY, USA., Sholle ET; Information Technologies & Services Department, Weill Cornell Medicine, New York, NY, USA., Schenck EJ; Department of Medicine, Weill Cornell Medicine, New York, NY, USA., Westover CD; Department of Physiology and Biophysics, Weill Cornell Medicine, New York, NY, USA., Hassan C; Department of Physiology and Biophysics, Weill Cornell Medicine, New York, NY, USA., Ryon K; Department of Physiology and Biophysics, Weill Cornell Medicine, New York, NY, USA., Young B; Department of Physiology and Biophysics, Weill Cornell Medicine, New York, NY, USA., Bhattacharya C; Department of Physiology and Biophysics, Weill Cornell Medicine, New York, NY, USA., Ng DL; Department of Laboratory Medicine, University of California, San Francisco, CA, USA., Granados AC; Department of Laboratory Medicine, University of California, San Francisco, CA, USA.; UCSF-Abbott Viral Diagnostics and Discovery Center, San Francisco, CA, USA., Santos YA; Department of Laboratory Medicine, University of California, San Francisco, CA, USA.; UCSF-Abbott Viral Diagnostics and Discovery Center, San Francisco, CA, USA., Servellita V; Department of Laboratory Medicine, University of California, San Francisco, CA, USA.; UCSF-Abbott Viral Diagnostics and Discovery Center, San Francisco, CA, USA., Federman S; Department of Laboratory Medicine, University of California, San Francisco, CA, USA.; UCSF-Abbott Viral Diagnostics and Discovery Center, San Francisco, CA, USA., Ruggiero P; Department of Pathology and Laboratory Medicine, Weill Cornell Medicine, New York, NY, USA., Fungtammasan A; DNAnexus, Inc., Mountain View, CA, USA., Chin CS; DNAnexus, Inc., Mountain View, CA, USA., Pearson NM; Root Deep Insight, Boston, MA, USA., Langhorst BW; New England Biolabs, Ipswich, MA, USA., Tanner NA; New England Biolabs, Ipswich, MA, USA., Kim Y; NanoString Technologies, Seattle, WA, USA., Reeves JW; NanoString Technologies, Seattle, WA, USA., Hether TD; NanoString Technologies, Seattle, WA, USA., Warren SE; NanoString Technologies, Seattle, WA, USA., Bailey M; NanoString Technologies, Seattle, WA, USA., Gawrys J; Department of Pathology and Laboratory Medicine, Weill Cornell Medicine, New York, NY, USA., Meleshko D; Department of Physiology and Biophysics, Weill Cornell Medicine, New York, NY, USA.; Tri-Institutional Computational Biology & Medicine Program, Weill Cornell Medicine, New York, NY, USA., Xu D; Genomics Resources Core Facility, Weill Cornell Medicine, New York, NY, USA., Couto-Rodriguez M; Biotia, Inc., New York, NY, USA., Nagy-Szakal D; Biotia, Inc., New York, NY, USA.; Department of Cell Biology, SUNY Downstate Health Sciences University, New York, NY, USA., Barrows J; Biotia, Inc., New York, NY, USA., Wells H; Biotia, Inc., New York, NY, USA., O'Hara NB; Biotia, Inc., New York, NY, USA.; Department of Cell Biology, SUNY Downstate Health Sciences University, New York, NY, USA., Rosenfeld JA; Rutgers Cancer Institute of New Jersey, New York, NJ, USA.; Department of Pathology, Robert Wood Johnson Medical School, New York, NJ, USA., Chen Y; Rutgers Cancer Institute of New Jersey, New York, NJ, USA., Steel PAD; Department of Emergency Medicine, Weill Cornell Medicine, New York, NY, USA., Shemesh AJ; Department of Emergency Medicine, Weill Cornell Medicine, New York, NY, USA., Xiang J; Genomics Resources Core Facility, Weill Cornell Medicine, New York, NY, USA., Thierry-Mieg J; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD, USA., Thierry-Mieg D; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD, USA., Iftner A; Institute of Medical Virology and Epidemiology of Viral Diseases, University Hospital Tuebingen, Tuebingen, Germany., Bezdan D; Institute of Medical Virology and Epidemiology of Viral Diseases, University Hospital Tuebingen, Tuebingen, Germany., Sanchez E; Department of Medicine, Weill Cornell Medicine, New York, NY, USA., Campion TR Jr; Information Technologies & Services Department, Weill Cornell Medicine, New York, NY, USA.; Department of Population Health Sciences, Weill Cornell Medicine, New York, NY, USA., Sipley J; Department of Pathology and Laboratory Medicine, Weill Cornell Medicine, New York, NY, USA., Cong L; Department of Pathology and Laboratory Medicine, Weill Cornell Medicine, New York, NY, USA., Craney A; Department of Pathology and Laboratory Medicine, Weill Cornell Medicine, New York, NY, USA., Velu P; Department of Pathology and Laboratory Medicine, Weill Cornell Medicine, New York, NY, USA., Melnick AM; Department of Medicine, Weill Cornell Medicine, New York, NY, USA., Shapira S; Department of Biomedical Informatics, Department of Systems Biology, Department of Medicine, Institute for Genomic Medicine, Columbia University, Columbia, NY, USA., Hajirasouliha I; Department of Physiology and Biophysics, Weill Cornell Medicine, New York, NY, USA.; The HRH Prince Alwaleed Bin Talal Bin Abdulaziz Alsaud Institute for Computational Biomedicine, Weill Cornell Medicine, New York, NY, USA.; Englander Institute for Precision Medicine and the Meyer Cancer Center, Weill Cornell Medicine, New York, NY, USA., Borczuk A; Department of Medicine, Weill Cornell Medicine, New York, NY, USA., Iftner T; Institute of Medical Virology and Epidemiology of Viral Diseases, University Hospital Tuebingen, Tuebingen, Germany., Salvatore M; Department of Medicine, Weill Cornell Medicine, New York, NY, USA.; Department of Population Health Sciences, Weill Cornell Medicine, New York, NY, USA., Loda M; Department of Pathology and Laboratory Medicine, Weill Cornell Medicine, New York, NY, USA., Westblade LF; Department of Pathology and Laboratory Medicine, Weill Cornell Medicine, New York, NY, USA.; Department of Medicine, Weill Cornell Medicine, New York, NY, USA., Cushing M; Department of Pathology and Laboratory Medicine, Weill Cornell Medicine, New York, NY, USA., Wu S; Hangzhou Cancer Institute, Hangzhou Cancer Hospital, Hangzhou, China.; Department of Radiation Oncology, Hangzhou Cancer Hospital, Hangzhou, China., Levy S; HudsonAlpha Discovery Institute, Huntsville, AL, USA., Chiu C; Department of Laboratory Medicine, University of California, San Francisco, CA, USA.; UCSF-Abbott Viral Diagnostics and Discovery Center, San Francisco, CA, USA.; Department of Medicine, Division of Infectious Diseases, University of California, San Francisco, CA, USA., Schwartz RE; Department of Medicine, Weill Cornell Medicine, New York, NY, USA. res2025@med.cornell.edu., Tatonetti N; Department of Biomedical Informatics, Department of Systems Biology, Department of Medicine, Institute for Genomic Medicine, Columbia University, Columbia, NY, USA. npt2105@cumc.columbia.edu., Rennert H; Department of Pathology and Laboratory Medicine, Weill Cornell Medicine, New York, NY, USA. har2006@med.cornell.edu., Imielinski M; New York Genome Center, New York, NY, USA. mai9037@med.cornell.edu.; Department of Pathology and Laboratory Medicine, Weill Cornell Medicine, New York, NY, USA. mai9037@med.cornell.edu.; Englander Institute for Precision Medicine and the Meyer Cancer Center, Weill Cornell Medicine, New York, NY, USA. mai9037@med.cornell.edu., Mason CE; Department of Physiology and Biophysics, Weill Cornell Medicine, New York, NY, USA. chm2042@med.cornell.edu.; The HRH Prince Alwaleed Bin Talal Bin Abdulaziz Alsaud Institute for Computational Biomedicine, Weill Cornell Medicine, New York, NY, USA. chm2042@med.cornell.edu.; WorldQuant Initiative for Quantitative Prediction, Weill Cornell Medicine, New York, NY, USA. chm2042@med.cornell.edu.; The Feil Family Brain and Mind Research Institute, Weill Cornell Medicine, New York, NY, USA. chm2042@med.cornell.edu.

Publikováno v: Nature communications [Nat Commun] 2021 Mar 12; Vol. 12 (1), pp. 1660. Date of Electronic Publication: 2021 Mar 12.

Aquificae overcomes competition by archaeal thermophiles, and crowding by bacterial mesophiles, to dominate the boiling vent-water of a Trans-Himalayan sulfur-borax spring.

Autor: Mondal, Nibendu¹ (AUTHOR), Dutta, Subhajit¹ (AUTHOR), Chatterjee, Sumit¹ (AUTHOR), Sarkar, Jagannath¹ (AUTHOR), Mondal, Mahamadul¹ (AUTHOR), Roy, Chayan² (AUTHOR), Chakraborty, Ranadhir³ (AUTHOR), Ghosh, Wriddhiman¹ (AUTHOR) wriman@jcbose.ac.in

Publikováno v: PLoS ONE. 10/25/2024, Vol. 19 Issue 10, p1-37. 37p.

Accelerated Aging Effects Observed In Vitro after an Exposure to Gamma-Rays Delivered at Very Low and Continuous Dose-Rate Equivalent to 1–5 Weeks in International Space Station.

Autor: Restier-Verlet, Juliette¹ (AUTHOR) juliette.restier--verlet@inserm.fr, Ferlazzo, Mélanie L.¹ (AUTHOR) melanie.ferlazzo@gmail.com, Granzotto, Adeline¹ (AUTHOR) adeline.granzotto@inserm.fr, Al-Choboq, Joëlle¹ (AUTHOR) joelle.al-choboq@inserm.fr, Bellemou, Camélia¹ (AUTHOR) camelia.bellemou@hotmail.com, Estavoyer, Maxime² (AUTHOR) maxime.estavoyer@inria.fr, Lecomte, Florentin² (AUTHOR) florentin.lecomte@etu.univ-lyon1.fr, Bourguignon, Michel^1,3 (AUTHOR) michel.bourguignon@inserm.fr, Pujo-Menjouet, Laurent² (AUTHOR) pujo@math.univ-lyon1.fr, Foray, Nicolas¹ (AUTHOR) nicolas.foray@inserm.fr

Publikováno v: Cells (2073-4409). Oct2024, Vol. 13 Issue 20, p1703. 17p.