Zobrazeno 1 - 10
of 285
pro vyhledávání: '"Aerts Jan"'
Autor:
Bot, Daniel M., Aerts, Jan
Dimensionality reduction algorithms are often used to visualise high-dimensional data. Previously, studies have used prior information to enhance or suppress expected patterns in projections. In this paper, we adapt such techniques for domain knowled
Externí odkaz:
http://arxiv.org/abs/2405.09204
Autor:
Bach, Benjamin, Keck, Mandy, Rajabiyazdi, Fateme, Losev, Tatiana, Meirelles, Isabel, Dykes, Jason, Laramee, Robert S., AlKadi, Mashael, Stoiber, Christina, Huron, Samuel, Perin, Charles, Morais, Luiz, Aigner, Wolfgang, Kosminsky, Doris, Boucher, Magdalena, Knudsen, Søren, Manataki, Areti, Aerts, Jan, Hinrichs, Uta, Roberts, Jonathan C., Carpendale, Sheelagh
This paper is a call to action for research and discussion on data visualization education. As visualization evolves and spreads through our professional and personal lives, we need to understand how to support and empower a broad and diverse communi
Externí odkaz:
http://arxiv.org/abs/2308.07703
Publikováno v:
BMC Bioinformatics, Vol 13, Iss 1, p 240 (2012)
Abstract Background The University of California, Santa Cruz (UCSC) genome database is among the most used sources of genomic annotation in human and other organisms. The database offers an excellent web-based graphical user interface (the UCSC genom
Externí odkaz:
https://doaj.org/article/3e99c00f91144fd89fba11be7e7f81e8
Publikováno v:
BMC Bioinformatics, Vol 13, Iss 1, p 45 (2012)
Abstract Background Elucidating the genotype-phenotype connection is one of the big challenges of modern molecular biology. To fully understand this connection, it is necessary to consider the underlying networks and the time factor. In this context
Externí odkaz:
https://doaj.org/article/42b2dceb2a4d4883a4bc50a32bfd4e8c
Autor:
Moschopoulos Charalampos N, Pavlopoulos Georgios A, Iacucci Ernesto, Aerts Jan, Likothanassis Spiridon, Schneider Reinhard, Kossida Sophia
Publikováno v:
BMC Research Notes, Vol 4, Iss 1, p 549 (2011)
Abstract Background Protein-Protein interactions (PPI) play a key role in determining the outcome of most cellular processes. The correct identification and characterization of protein interactions and the networks, which they comprise, is critical f
Externí odkaz:
https://doaj.org/article/1de2cc4d67d94c449edbedbaad595509
Publikováno v:
BMC Research Notes, Vol 4, Iss 1, p 384 (2011)
Abstract Background Biological processes such as metabolic pathways, gene regulation or protein-protein interactions are often represented as graphs in systems biology. The understanding of such networks, their analysis, and their visualization are t
Externí odkaz:
https://doaj.org/article/5d20970f72df4ae8a0afaef7da87a588
Autor:
Katayama Toshiaki, Wilkinson Mark D, Vos Rutger, Kawashima Takeshi, Kawashima Shuichi, Nakao Mitsuteru, Yamamoto Yasunori, Chun Hong-Woo, Yamaguchi Atsuko, Kawano Shin, Aerts Jan, Aoki-Kinoshita Kiyoko F, Arakawa Kazuharu, Aranda Bruno, Bonnal Raoul JP, Fernández José M, Fujisawa Takatomo, Gordon Paul MK, Goto Naohisa, Haider Syed, Harris Todd, Hatakeyama Takashi, Ho Isaac, Itoh Masumi, Kasprzyk Arek, Kido Nobuhiro, Kim Young-Joo, Kinjo Akira R, Konishi Fumikazu, Kovarskaya Yulia, von Kuster Greg, Labarga Alberto, Limviphuvadh Vachiranee, McCarthy Luke, Nakamura Yasukazu, Nam Yunsun, Nishida Kozo, Nishimura Kunihiro, Nishizawa Tatsuya, Ogishima Soichi, Oinn Tom, Okamoto Shinobu, Okuda Shujiro, Ono Keiichiro, Oshita Kazuki, Park Keun-Joon, Putnam Nicholas, Senger Martin, Severin Jessica, Shigemoto Yasumasa, Sugawara Hideaki, Taylor James, Trelles Oswaldo, Yamasaki Chisato, Yamashita Riu, Satoh Noriyuki, Takagi Toshihisa
Publikováno v:
Journal of Biomedical Semantics, Vol 2, Iss 1, p 4 (2011)
Abstract Background The interaction between biological researchers and the bioinformatics tools they use is still hampered by incomplete interoperability between such tools. To ensure interoperability initiatives are effectively deployed, end-user ap
Externí odkaz:
https://doaj.org/article/8f85f5d5606446c2bc750ba1ffb531d8
Autor:
Pavlopoulos Georgios A, Secrier Maria, Moschopoulos Charalampos N, Soldatos Theodoros G, Kossida Sophia, Aerts Jan, Schneider Reinhard, Bagos Pantelis G
Publikováno v:
BioData Mining, Vol 4, Iss 1, p 10 (2011)
Abstract Understanding complex systems often requires a bottom-up analysis towards a systems biology approach. The need to investigate a system, not only as individual components but as a whole, emerges. This can be done by examining the elementary c
Externí odkaz:
https://doaj.org/article/c1d9c9ee6bf543fb9a74a337169733cc
Autor:
Katayama Toshiaki, Arakawa Kazuharu, Nakao Mitsuteru, Ono Keiichiro, Aoki-Kinoshita Kiyoko F, Yamamoto Yasunori, Yamaguchi Atsuko, Kawashima Shuichi, Chun Hong-Woo, Aerts Jan, Aranda Bruno, Barboza Lord, Bonnal Raoul JP, Bruskiewich Richard, Bryne Jan C, Fernández José M, Funahashi Akira, Gordon Paul MK, Goto Naohisa, Groscurth Andreas, Gutteridge Alex, Holland Richard, Kano Yoshinobu, Kawas Edward A, Kerhornou Arnaud, Kibukawa Eri, Kinjo Akira R, Kuhn Michael, Lapp Hilmar, Lehvaslaiho Heikki, Nakamura Hiroyuki, Nakamura Yasukazu, Nishizawa Tatsuya, Nobata Chikashi, Noguchi Tamotsu, Oinn Thomas M, Okamoto Shinobu, Owen Stuart, Pafilis Evangelos, Pocock Matthew, Prins Pjotr, Ranzinger René, Reisinger Florian, Salwinski Lukasz, Schreiber Mark, Senger Martin, Shigemoto Yasumasa, Standley Daron M, Sugawara Hideaki, Tashiro Toshiyuki, Trelles Oswaldo, Vos Rutger A, Wilkinson Mark D, York William, Zmasek Christian M, Asai Kiyoshi, Takagi Toshihisa
Publikováno v:
Journal of Biomedical Semantics, Vol 1, Iss 1, p 8 (2010)
Abstract Web services have become a key technology for bioinformatics, since life science databases are globally decentralized and the exponential increase in the amount of available data demands for efficient systems without the need to transfer ent
Externí odkaz:
https://doaj.org/article/daa32dc8e338496886d3efaa44124737
Publikováno v:
BMC Bioinformatics, Vol 10, Iss 1, p 221 (2009)
Abstract The Ruby programming language has a lot to offer to any scientist with electronic data to process. Not only is the initial learning curve very shallow, but its reflection and meta-programming capabilities allow for the rapid creation of rela
Externí odkaz:
https://doaj.org/article/c1fd9eb8cf79427890c7d5adc4a8023c