The Potential for a Released Autosomal X-Shredder Becoming a Driving-Y Chromosome and Invasively Suppressing Wild Populations of Malaria Mosquitoes.

Autor: Alcalay Y; Department of Entomology, Robert H. Smith Faculty of Agriculture, Food and Environment, Hebrew University of Jerusalem, Rehovot, Israel., Fuchs S; Department of Life Sciences, Imperial College London, London, United Kingdom., Galizi R; Centre for Applied Entomology and Parasitology, School of Life Sciences, Keele University, Keele, United Kingdom., Bernardini F; Department of Life Sciences, Imperial College London, London, United Kingdom., Haghighat-Khah RE; Department of Life Sciences, Imperial College London, London, United Kingdom., Rusch DB; Center for Genomics and Bioinformatics, Indiana University, Bloomington, IN, United States., Adrion JR; Institute of Ecology and Evolution, University of Oregon, Eugene, OR, United States., Hahn MW; Department of Biology, Indiana University, Bloomington, IN, United States.; Department of Computer Science, Indiana University, Bloomington, IN, United States., Tortosa P; Unité Mixte de Recherche Processus Infectieux en Milieu Insulaire Tropical (UMR PIMIT), Université de La Réunion, INSERM 1187, CNRS 9192, IRD 249, Plateforme de Recherche CYROI, Saint Denis, France., Rotenberry R; Centers for Disease Control and Prevention, Atlanta, GA, United States., Papathanos PA; Department of Entomology, Robert H. Smith Faculty of Agriculture, Food and Environment, Hebrew University of Jerusalem, Rehovot, Israel.

Publikováno v: Frontiers in bioengineering and biotechnology [Front Bioeng Biotechnol] 2021 Dec 03; Vol. 9, pp. 752253. Date of Electronic Publication: 2021 Dec 03 (Print Publication: 2021).

Evolution of genome structure in the Drosophila simulans species complex.

Autor: Chakraborty M; Department of Ecology and Evolutionary Biology, University of California Irvine, Irvine, California 92697, USA., Chang CH; Department of Biology, University of Rochester, Rochester, New York 14627, USA., Khost DE; Department of Biology, University of Rochester, Rochester, New York 14627, USA.; FAS Informatics and Scientific Applications, Harvard University, Cambridge, Massachusetts 02138, USA., Vedanayagam J; Department of Developmental Biology, Memorial Sloan-Kettering Cancer Center, New York, New York 10065, USA., Adrion JR; Institute of Ecology and Evolution, University of Oregon, Eugene, Oregon 97403, USA., Liao Y; Department of Ecology and Evolutionary Biology, University of California Irvine, Irvine, California 92697, USA., Montooth KL; School of Biological Sciences, University of Nebraska-Lincoln, Lincoln, Nebraska 68502, USA., Meiklejohn CD; School of Biological Sciences, University of Nebraska-Lincoln, Lincoln, Nebraska 68502, USA., Larracuente AM; Department of Biology, University of Rochester, Rochester, New York 14627, USA., Emerson JJ; Department of Ecology and Evolutionary Biology, University of California Irvine, Irvine, California 92697, USA.

Publikováno v: Genome research [Genome Res] 2021 Mar; Vol. 31 (3), pp. 380-396. Date of Electronic Publication: 2021 Feb 09.

Male-biased recombination at chromosome ends in a songbird revealed by precisely mapping crossover positions.

Autor: Zhang, Hongkai¹ (AUTHOR) hongkai.zhang@biol.lu.se, Lundberg, Max¹ (AUTHOR), Ponnikas, Suvi² (AUTHOR), Hasselquist, Dennis¹ (AUTHOR), Hansson, Bengt¹ (AUTHOR) hongkai.zhang@biol.lu.se

Publikováno v: G3: Genes | Genomes | Genetics. Sep2024, Vol. 14 Issue 9, p1-12. 12p.

Classification of SARS-CoV-2 sequences as recombinants via a pre-trained CNN and identification of a mathematical signature relative to recombinant feature at Spike, via interpretability.

Autor: Guerrero-Tamayo, Ana¹ (AUTHOR) ana.guerrero@deusto.es, Sanz Urquijo, Borja¹ (AUTHOR), Olivares, Isabel² (AUTHOR), Moragues Tosantos, María-Dolores³ (AUTHOR), Casado, Concepción² (AUTHOR), Pastor-López, Iker¹ (AUTHOR)

Publikováno v: PLoS ONE. 8/26/2024, Vol. 19 Issue 8, p1-27. 27p.

A community-maintained standard library of population genetic models.

Autor: Adrion JR; Department of Biology and Institute of Ecology and Evolution, University of Oregon, Eugene, United States., Cole CB; Weatherall Institute of Molecular Medicine, University of Oxford, Oxford, United Kingdom., Dukler N; Simons Center for Quantitative Biology, Cold Spring Harbor Laboratory, Cold Spring Harbor, United States., Galloway JG; Department of Biology and Institute of Ecology and Evolution, University of Oregon, Eugene, United States., Gladstein AL; Department of Genetics, University of North Carolina at Chapel Hill, Chapel Hill, United States., Gower G; Lundbeck GeoGenetics Centre, Globe Institute, University of Copenhagen, Copenhagen, Denmark., Kyriazis CC; Department of Ecology and Evolutionary Biology, University of California, Los Angeles, Los Angeles, United States., Ragsdale AP; Department of Human Genetics, McGill University, Montreal, Canada., Tsambos G; Melbourne Integrative Genomics, School of Mathematics and Statistics, University of Melbourne, Melbourne, Australia., Baumdicker F; Department of Mathematical Stochastics, University of Freiburg, Freiburg, Germany., Carlson J; Department of Genome Sciences, University of Washington, Seattle, United States., Cartwright RA; The Biodesign Institute and The School of Life Sciences, Arizona State University, Tempe, United States., Durvasula A; Department of Human Genetics, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, United States., Gronau I; The Efi Arazi School of Computer Science, Herzliya Interdisciplinary Center, Herzliya, Israel., Kim BY; Department of Biology, Stanford University, Stanford, United States., McKenzie P; Department of Ecology, Evolution, and Environmental Biology, Columbia University, New York, United States., Messer PW; Department of Computational BiologyCornell University, Ithaca, United States., Noskova E; Computer Technologies Laboratory, ITMO University, Saint Petersburg, Russian Federation., Ortega-Del Vecchyo D; International Laboratory for Human Genome Research, National Autonomous University of Mexico, Juriquilla, Mexico., Racimo F; Lundbeck GeoGenetics Centre, Globe Institute, University of Copenhagen, Copenhagen, Denmark., Struck TJ; Departmentof Molecular and Cellular Biology, University of Arizona, Tucson, United States., Gravel S; Department of Human Genetics, McGill University, Montreal, Canada., Gutenkunst RN; Departmentof Molecular and Cellular Biology, University of Arizona, Tucson, United States., Lohmueller KE; Department of Ecology and Evolutionary Biology, University of California, Los Angeles, Los Angeles, United States.; Department of Human Genetics, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, United States., Ralph PL; Department of Biology and Institute of Ecology and Evolution, University of Oregon, Eugene, United States.; Department of Mathematics, University of Oregon, Eugene, United States., Schrider DR; Department of Genetics, University of North Carolina at Chapel Hill, Chapel Hill, United States., Siepel A; Simons Center for Quantitative Biology, Cold Spring Harbor Laboratory, Cold Spring Harbor, United States., Kelleher J; Big Data Institute, Li Ka Shing Centre for Health Information and Discovery, University of Oxford, Oxford, United Kingdom., Kern AD; Department of Biology and Institute of Ecology and Evolution, University of Oregon, Eugene, United States.

Publikováno v: ELife [Elife] 2020 Jun 23; Vol. 9. Date of Electronic Publication: 2020 Jun 23.