Zobrazeno 1 - 10
of 18
pro vyhledávání: '"Adrien Rougny"'
Autor:
Anna Niarakis, Marek Ostaszewski, Alexander Mazein, Inna Kuperstein, Martina Kutmon, Marc E. Gillespie, Akira Funahashi, Marcio Luis Acencio, Ahmed Hemedan, Michael Aichem, Karsten Klein, Tobias Czauderna, Felicia Burtscher, Takahiro G. Yamada, Yusuke Hiki, Noriko F. Hiroi, Finterly Hu, Nhung Pham, Friederike Ehrhart, Egon L. Willighagen, Alberto Valdeolivas, Aurelien Dugourd, Francesco Messina, Marina Esteban-Medina, Maria Peña-Chilet, Kinza Rian, Sylvain Soliman, Sara Sadat Aghamiri, Bhanwar Lal Puniya, Aurélien Naldi, Tomáš Helikar, Vidisha Singh, Marco Fariñas Fernández, Viviam Bermudez, Eirini Tsirvouli, Arnau Montagud, Vincent Noël, Miguel Ponce-de-Leon, Dieter Maier, Angela Bauch, Benjamin M. Gyori, John A. Bachman, Augustin Luna, Janet Piñero, Laura I. Furlong, Irina Balaur, Adrien Rougny, Yohan Jarosz, Rupert W. Overall, Robert Phair, Livia Perfetto, Lisa Matthews, Devasahayam Arokia Balaya Rex, Marija Orlic-Milacic, Luis Cristobal Monraz Gomez, Bertrand De Meulder, Jean Marie Ravel, Bijay Jassal, Venkata Satagopam, Guanming Wu, Martin Golebiewski, Piotr Gawron, Laurence Calzone, Jacques S. Beckmann, Chris T. Evelo, Peter D’Eustachio, Falk Schreiber, Julio Saez-Rodriguez, Joaquin Dopazo, Martin Kuiper, Alfonso Valencia, Olaf Wolkenhauer, Hiroaki Kitano, Emmanuel Barillot, Charles Auffray, Rudi Balling, Reinhard Schneider, the COVID-19 Disease Map Community
Publikováno v:
Frontiers in Immunology, Vol 14 (2024)
IntroductionThe COVID-19 Disease Map project is a large-scale community effort uniting 277 scientists from 130 Institutions around the globe. We use high-quality, mechanistic content describing SARS-CoV-2-host interactions and develop interoperable b
Externí odkaz:
https://doaj.org/article/ac53015acf3143cf9c3f232ae67ad161
Autor:
Alexander Mazein, Marcio Luis Acencio, Irina Balaur, Adrien Rougny, Danielle Welter, Anna Niarakis, Diana Ramirez Ardila, Ugur Dogrusoz, Piotr Gawron, Venkata Satagopam, Wei Gu, Andreas Kremer, Reinhard Schneider, Marek Ostaszewski
Publikováno v:
Frontiers in Bioinformatics, Vol 3 (2023)
As a conceptual model of disease mechanisms, a disease map integrates available knowledge and is applied for data interpretation, predictions and hypothesis generation. It is possible to model disease mechanisms on different levels of granularity and
Externí odkaz:
https://doaj.org/article/f0f445384bda413f8afbd1d17acb3009
Publikováno v:
BMC Bioinformatics, Vol 22, Iss 1, Pp 1-24 (2021)
Abstract Background The temporal coordination of biological processes by the circadian clock is an important mechanism, and its disruption has negative health outcomes, including cancer. Experimental and theoretical evidence suggests that the oscilla
Externí odkaz:
https://doaj.org/article/7dfa29a3545e4977a1d106199cad57bc
Publikováno v:
Bioinformatics. 39
SummaryThe systems biology graphical notation (SBGN) has become the de facto standard for the graphical representation of molecular maps. Having rapid and easy access to the content of large collections of maps is necessary to perform semantic or gra
Autor:
Michael L. Blinov, Vasundra Touré, Anatoly Sorokin, Dagmar Waltemath, Gary D. Bader, Denis Shirshov, John Albanese, Adrien Rougny, Alexander Mazein
Publikováno v:
Briefings in bioinformatics
Briefings in Bioinformatics
Briefings in Bioinformatics
A comprehensible representation of a molecular network is key to communicating and understanding scientific results in systems biology. The Systems Biology Graphical Notation (SBGN) has emerged as the main standard to represent such networks graphica
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::9c166935070f040fc796d11ad6ddd82a
Publikováno v:
BMC Bioinformatics
BMC Bioinformatics, BioMed Central, 2021, 22 (1), pp.240. ⟨10.1186/s12859-021-04158-9⟩
BMC Bioinformatics, 2021, 22 (1), pp.240. ⟨10.1186/s12859-021-04158-9⟩
BMC Bioinformatics, Vol 22, Iss 1, Pp 1-24 (2021)
BMC Bioinformatics, BioMed Central, 2021, 22 (1), pp.240. ⟨10.1186/s12859-021-04158-9⟩
BMC Bioinformatics, 2021, 22 (1), pp.240. ⟨10.1186/s12859-021-04158-9⟩
BMC Bioinformatics, Vol 22, Iss 1, Pp 1-24 (2021)
Background The temporal coordination of biological processes by the circadian clock is an important mechanism, and its disruption has negative health outcomes, including cancer. Experimental and theoretical evidence suggests that the oscillators driv
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::5e169280561314261efb7ead04ddbfd9
https://www.hal.inserm.fr/inserm-03228503/file/Rougny2021_Article_ADetailedMapOfCoupledCircadian.pdf
https://www.hal.inserm.fr/inserm-03228503/file/Rougny2021_Article_ADetailedMapOfCoupledCircadian.pdf
Autor:
Sachiyo Aburatani, Shuji Muramatsu, Shin-ichi Sakasegawa, Yoshiaki Yasutake, Keitaro Yoshida, Tomohiro Tamura, Satomi Murata, Arturo Magana-Mora, Kenji Konishi, Toshitaka Kumagai, Adrien Rougny
Publikováno v:
Bioscience, Biotechnology, and Biochemistry. 83:1974-1984
Burkholderia stabilis FERMP-21014 produces highly active cholesterol esterase in the presence of fatty acids. To develop an overexpression system for cholesterol esterase production, we carried out RNA sequencing analyses to screen strongly active pr
Autor:
Adrien Rougny, Alexander Mazein, Julio Saez-Rodriguez, Marek Ostaszewski, Reinhard Schneider, Jonathan R. Karr
Publikováno v:
Briefings in Bioinformatics
Detailed maps of the molecular basis of the disease are powerful tools for interpreting data and building predictive models. Modularity and composability are considered necessary network features for large-scale collaborative efforts to build compreh
The Systems Biology Graphical Notation (SBGN) is a community standard developed to reduce ambiguity in the visual representation of biomolecular networks by providing a standardized description of sets of symbols to use. SBGN comprises three distinct
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::048ddc645044add6e54a8fd9f961e870
https://doi.org/10.1016/b978-0-12-801238-3.11515-6
https://doi.org/10.1016/b978-0-12-801238-3.11515-6
The temporal coordination of biological processes by the circadian clock is an important mechanism, and its disruption has negative health outcomes, including cancer. Experimental and theoretical evidence suggests that the oscillators driving the cir
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::0d7c4816335f0c182addf8a850711fd8
https://doi.org/10.1101/2020.11.17.386110
https://doi.org/10.1101/2020.11.17.386110